Alignments for a candidate for leuC in Magnetospirillum magneticum AMB-1

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate AMB_RS20560 AMB_RS20560 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>FitnessBrowser__Magneto:AMB_RS20560
          Length = 467

 Score =  623 bits (1607), Expect = 0.0
 Identities = 310/463 (66%), Positives = 364/463 (78%)

Query: 3   KTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMD 62
           +TL++K++DAH+V   ++ T L+YIDRH+VHEVTSPQAF+GL   GR VR P  T A  D
Sbjct: 5   RTLFDKIWDAHLVDVQDDGTCLIYIDRHMVHEVTSPQAFEGLEMSGRKVRHPELTLAVAD 64

Query: 63  HNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLPGM 122
           HNV T  +      E +RIQ++ L  N K+FGVE   ++   QG+VH++GPEQG TLPG 
Sbjct: 65  HNVPTTDRSKGIENEESRIQVETLEANAKKFGVEYLRMDDIRQGVVHIVGPEQGFTLPGT 124

Query: 123 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAKD 182
           TIVCGDSHTATHGAFG+LAFGIGTSEVEHVLATQTL Q  AK M+I V GK  PG+TAKD
Sbjct: 125 TIVCGDSHTATHGAFGSLAFGIGTSEVEHVLATQTLVQKPAKNMRITVTGKPGPGVTAKD 184

Query: 183 IVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFNY 242
           IVLAIIGK G+AGGTG+VVEF GEAIRDLSMEGRMT+CNM IE GA+AGLVAPDE TF Y
Sbjct: 185 IVLAIIGKIGTAGGTGYVVEFAGEAIRDLSMEGRMTVCNMTIEAGARAGLVAPDEKTFAY 244

Query: 243 VKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVND 302
           + G+  +PKG  F+ AV+YWKTL TDEGA FD  VTL A  + PQ+TWGT+P  VI++  
Sbjct: 245 IAGKPRSPKGAAFEAAVSYWKTLFTDEGAHFDAEVTLDASTLVPQITWGTSPEDVIAITG 304

Query: 303 NIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEIA 362
            +P+PA   D  +R + E++L YMGL  G+  T++AID VFIGSCTN RIED RAAAEI 
Sbjct: 305 TVPNPADIKDEAKRKAVERSLDYMGLTAGMKATDIAIDVVFIGSCTNGRIEDFRAAAEIF 364

Query: 363 KGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGE 422
           KGRKVA  VQAL+VPGSG VK QAE EGLDKIFIEAG EWR PGCSMCLAMN D+L PG+
Sbjct: 365 KGRKVAASVQALIVPGSGLVKEQAEQEGLDKIFIEAGAEWREPGCSMCLAMNADQLKPGQ 424

Query: 423 RCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNI 465
           R ASTSNRNFEGRQGRGGRTHLVSPAMAAAAA+TG   D+R++
Sbjct: 425 RSASTSNRNFEGRQGRGGRTHLVSPAMAAAAAITGKLTDVRSL 467


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 760
Number of extensions: 27
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 467
Length adjustment: 33
Effective length of query: 433
Effective length of database: 434
Effective search space:   187922
Effective search space used:   187922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate AMB_RS20560 AMB_RS20560 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.24495.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24495.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.