Alignments for a candidate for hisN in Magnetospirillum magneticum AMB-1

Align Histidinol-phosphatase [alternative form] (EC 3.1.3.15) (characterized)
to candidate AMB_RS21100 AMB_RS21100 histidinol-phosphatase

Query= reanno::azobra:AZOBR_RS03845
         (260 letters)



>FitnessBrowser__Magneto:AMB_RS21100
          Length = 258

 Score =  318 bits (816), Expect = 5e-92
 Identities = 158/254 (62%), Positives = 189/254 (74%), Gaps = 1/254 (0%)

Query: 5   CPTPLVTLAERLADASGPVIRQYFRTPVAVDDKADASPVTIADREAERTIRAIIEAERPD 64
           CP+  + LAE+LADA+ PV+R+YFRTPVAVDDKAD+SPVTIADRE E  +RAI+ AE P 
Sbjct: 4   CPSEFIALAEKLADAARPVVRKYFRTPVAVDDKADSSPVTIADREVEAAMRAILAAEAPS 63

Query: 65  DGIYGEEFGTKNLDAEWVWVIDPIDGTKSFITGRPIFGTLIALLHRGRPVLGVIDQPIVR 124
            GI GEE G +N DAE+VWV+DPIDGT +FITG+P FGTLI+L   G P+LG+IDQ    
Sbjct: 64  HGILGEEHGRENCDAEYVWVLDPIDGTAAFITGKPSFGTLISLARNGTPILGLIDQAFTN 123

Query: 125 DRWLGVEGRPTLFNGQPARVRECAGGLAAATLGTTSPDLFPGADQDAFRRVAGAAKVSVY 184
           +RWLG  GRPT  NGQPARVR C   LA A   TT+P+LF  A + A+ R+A   K   Y
Sbjct: 124 ERWLGALGRPTTLNGQPARVRACP-DLAHAYAFTTAPELFCEATRPAWDRIAAGCKRPRY 182

Query: 185 GGDCYSYGLLAAGYYDLVVESGLKLYDFAALVPVVTGAGGLMTDWDGRPLDATSSGRVVA 244
           G DCY+Y LL++G+ DLVVE+GLK YDFAALVPVV GAGG+MTDW G+PL   S G+V A
Sbjct: 183 GCDCYAYALLSSGFCDLVVEAGLKPYDFAALVPVVEGAGGIMTDWSGKPLTIHSDGKVCA 242

Query: 245 AGDARTHRETLAAL 258
           AGD R H E L  L
Sbjct: 243 AGDRRLHAEALGVL 256


Lambda     K      H
   0.320    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 305
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 258
Length adjustment: 24
Effective length of query: 236
Effective length of database: 234
Effective search space:    55224
Effective search space used:    55224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate AMB_RS21100 AMB_RS21100 (histidinol-phosphatase)
to HMM TIGR02067 (hisN: histidinol-phosphatase (EC 3.1.3.15))

Software error:

../bin/blast/fastacmd -i /tmp/list.702.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.702.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.