Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate AMB_RS22925 AMB_RS22925 imidazole glycerol phosphate synthase cyclase subunit
Query= BRENDA::Q5NMD6 (255 letters) >FitnessBrowser__Magneto:AMB_RS22925 Length = 252 Score = 341 bits (875), Expect = 7e-99 Identities = 169/247 (68%), Positives = 205/247 (82%), Gaps = 1/247 (0%) Query: 6 RIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGRGTMLD 65 RIIPCLDV DGRVVKGVNF DL+DAGDPVEQAK+YD AGADEL FLDI+ASHE R T+ D Sbjct: 5 RIIPCLDVKDGRVVKGVNFVDLIDAGDPVEQAKLYDKAGADELTFLDITASHENRDTIYD 64 Query: 66 VVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADRFGAQC 125 VV RTAE CFMPLTVGGGVR +D R LLLAGADKV++N+AAV RPE V E A++FG+QC Sbjct: 65 VVRRTAEQCFMPLTVGGGVRVNDDIRKLLLAGADKVSINTAAVHRPEFVREAAEKFGSQC 124 Query: 126 VVAAIDARRNG-DHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMDKDGTRDGYD 184 +V AIDA++ G +E++THGGR TGI+A++ A +T GAGEILLTSMD+DGT+ G++ Sbjct: 125 IVVAIDAKQTGPGKFEIFTHGGRNATGIDAVEWARRMTEYGAGEILLTSMDRDGTKQGFN 184 Query: 185 LELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYSLAEAHEALA 244 + LTR VAD+V VPVIASGGVGNLDH+VEG+ GHA+A+LAASIFHFG Y++A+A + Sbjct: 185 IPLTRAVADAVTVPVIASGGVGNLDHLVEGIRDGHATAVLAASIFHFGTYTIAQAKAHMR 244 Query: 245 KAGLTVR 251 AG+ VR Sbjct: 245 AAGIPVR 251 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 271 Number of extensions: 6 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 252 Length adjustment: 24 Effective length of query: 231 Effective length of database: 228 Effective search space: 52668 Effective search space used: 52668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate AMB_RS22925 AMB_RS22925 (imidazole glycerol phosphate synthase cyclase subunit)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)
../bin/blast/fastacmd -i /tmp/list.28458.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28458.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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