Alignments for a candidate for argE in Pseudomonas fluorescens FW300-N2E3

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate AO353_28235 AO353_28235 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__pseudo3_N2E3:AO353_28235
          Length = 385

 Score =  241 bits (616), Expect = 2e-68
 Identities = 139/374 (37%), Positives = 211/374 (56%), Gaps = 11/374 (2%)

Query: 5   EILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGY 64
           +IL +L+ F +V    N  ++ ++R  L S GI   ++    G ++N+FA+ GPKE  G 
Sbjct: 7   DILKRLMAFDTVSSESNMALIEYVRDLLLSKGIESLIVKDETGKKANLFASTGPKELPGI 66

Query: 65  IISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRP 124
           ++SGH DVVPAA   WT   F+  V+  R+YGRG+ DMKGF+A  + A+   A   L RP
Sbjct: 67  LLSGHTDVVPAAGQAWTVPAFQATVQEGRIYGRGSCDMKGFIALAIDAMLDAADHSLSRP 126

Query: 125 LHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGR 184
           L LALS+DEE GC GV  ++  L     +P   +IGEPT M+ +  HKGK + R   RG 
Sbjct: 127 LQLALSHDEETGCVGVRRLLDVLHLAPVRPFLCLIGEPTNMQFVLGHKGKGSYRTYCRGL 186

Query: 185 SGHSSRPDQGLNAIHGVAGVLTQAVAEADRLV--GGPFEHVFEPPYSSLQIGTVKGGQAV 242
             HSS   + +NAIH VA     A+ ++ + +   G  +  ++ PYS++ +G + GG+A+
Sbjct: 187 EAHSSLAPRSVNAIH-VACDFIAALRQSQQQLQEQGAQDTDYDVPYSTVHVGQIVGGKAL 245

Query: 243 NIIPDSCEVEFEARAISGVDPAELLAPVRKTAEALT------TLGFEVEWQELSAYPALS 296
           NI+P+ C ++FE R +   D  + L  ++  AE +       +   ++E + L+ YP L 
Sbjct: 246 NIVPNLCTLDFEVRNLPADDLDQFLTQMQARAEVIVREAKKLSSVADIEIETLNVYPGLD 305

Query: 297 LEPDAPLAALLEELTGREALPA-VSYGTEAGLF-QRAGIDAIICGPGDIGRAHKPDEYIL 354
             P       L+     +   A VS+GTE GLF QR  +  ++CGPG I +AHKPDE+I 
Sbjct: 306 THPSVEAVRFLKNFAAPDTGTAKVSFGTEGGLFKQRLDVPVVVCGPGSIEQAHKPDEFIE 365

Query: 355 IDELMACRAMVEAL 368
           I ++ A    +E L
Sbjct: 366 ISQMEAGERFLEGL 379


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 341
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 385
Length adjustment: 30
Effective length of query: 344
Effective length of database: 355
Effective search space:   122120
Effective search space used:   122120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AO353_28235 AO353_28235 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.28290.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28290.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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