Alignments for a candidate for argE in Pseudomonas fluorescens FW300-N2E3

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate AO353_29125 AO353_29125 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__pseudo3_N2E3:AO353_29125
          Length = 382

 Score =  280 bits (716), Expect = 5e-80
 Identities = 143/374 (38%), Positives = 220/374 (58%), Gaps = 8/374 (2%)

Query: 3   AAEILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEAR 62
           + ++L +LV F +     N  ++ ++R YLE   +  + +   +  ++N+FATIGP +  
Sbjct: 4   SVDLLKQLVAFDTTSRESNLHLIDFVRDYLERFDVPCERVYNEQRSKANLFATIGPADRP 63

Query: 63  GYIISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLR 122
           G ++SGH DVVP     WT  PF+L     +LYGRGT DMKG++A VLA VP L   PLR
Sbjct: 64  GIVLSGHTDVVPVDGQPWTVAPFQLSERDGKLYGRGTADMKGYIACVLALVPSLVNAPLR 123

Query: 123 RPLHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVR 182
           RP+H+ALSYDEE GC GV  ++  L +   +P+  IIGEPT ++ +  HKGK A R  + 
Sbjct: 124 RPVHIALSYDEEVGCLGVRSLLKALEQRPVKPMLCIIGEPTELKPVLGHKGKLAMRCDIH 183

Query: 183 GRSGHSSRPDQGLNAIHGVAGVLTQAVAEADRL-VGGPFEHVFEPPYSSLQIGTVKGGQA 241
           G + HS+    G+NAI   A ++ +      RL V    +  F+PP+S++Q G + GG+A
Sbjct: 184 GEACHSAYAPLGVNAIEYAAELIGELGRIGHRLKVPEHHDARFDPPFSTVQTGMISGGKA 243

Query: 242 VNIIPDSCEVEFEARAISGVDPAELLAPVRKTAE-------ALTTLGFEVEWQELSAYPA 294
           +NI+P  C  +FE RA+   DP+ +   ++  AE          +   ++ + ELSAYP 
Sbjct: 244 LNIVPADCRFDFEIRALPSQDPSVVAKELKTYAEQQVLPRMRAVSDQSDIRFSELSAYPG 303

Query: 295 LSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYIL 354
           L+ +  +  A L+   +G      V++GTE GLF  AGI  ++CGPG + + HKPDE++ 
Sbjct: 304 LATDAHSEAAELIAAFSGSREFGTVAFGTEGGLFDAAGIPTVVCGPGSMDQGHKPDEFVS 363

Query: 355 IDELMACRAMVEAL 368
           +D+L  C AM++ +
Sbjct: 364 LDQLKGCDAMLQRM 377


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 382
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 382
Length adjustment: 30
Effective length of query: 344
Effective length of database: 352
Effective search space:   121088
Effective search space used:   121088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AO353_29125 AO353_29125 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.26937.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26937.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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