Alignments for a candidate for trpA in Azospirillum brasilense Sp245

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate AZOBR_RS00520 AZOBR_RS00520 tryptophan synthase subunit alpha

Query= uniprot:M4NLA4
         (266 letters)



>FitnessBrowser__azobra:AZOBR_RS00520
          Length = 271

 Score =  238 bits (607), Expect = 1e-67
 Identities = 128/244 (52%), Positives = 157/244 (64%), Gaps = 1/244 (0%)

Query: 4   IDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMADGPV 63
           I RRFAALKA  R GL+ F+TAGDP  E   A++H L  AGADLIELG+PFSDPMADGP 
Sbjct: 1   IARRFAALKAEGRAGLVTFITAGDPDLETCRAVLHGLPAAGADLIELGLPFSDPMADGPA 60

Query: 64  IQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQAGV 123
           IQ AS RA+  G      L  V  FR+ DADTP++LMGY NPI  +G  RF  +A++AGV
Sbjct: 61  IQAASLRALHAGTTARKTLDLVRGFRETDADTPVILMGYYNPIHAYGVDRFLADAIEAGV 120

Query: 124 DGVLLVDCPLEESAVL-QPLRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFAGIT 182
           DG+++VD P EE   L  P   AG+  I LA PTT+  R+  +  +  GF+YYVS AGIT
Sbjct: 121 DGLIVVDLPPEEDEELCIPALKAGVNFIRLATPTTDDKRLPAVLQNTSGFVYYVSIAGIT 180

Query: 183 GAAHLSTGDIAARVADVRARAKAPVAVGFGIRDAASAKAIAGFADAVVIGSALVDRLAGA 242
           GAA      + A V  ++     PVAVGFGI+    A  +A  ADA V+GSA+V RLAG 
Sbjct: 181 GAASADNAAVGAAVERLKRHTDLPVAVGFGIKTPEQAADVARVADAAVVGSAIVTRLAGG 240

Query: 243 TDAG 246
            D G
Sbjct: 241 LDGG 244


Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 255
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 271
Length adjustment: 25
Effective length of query: 241
Effective length of database: 246
Effective search space:    59286
Effective search space used:    59286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate AZOBR_RS00520 AZOBR_RS00520 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.20461.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20461.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.