Alignments for a candidate for glcB in Azospirillum brasilense Sp245

Align Malate synthase (EC 2.3.3.9) (characterized)
to candidate AZOBR_RS03245 AZOBR_RS03245 malate synthase

Query= reanno::BFirm:BPHYT_RS12305
         (536 letters)



>FitnessBrowser__azobra:AZOBR_RS03245
          Length = 534

 Score =  623 bits (1607), Expect = 0.0
 Identities = 315/526 (59%), Positives = 388/526 (73%), Gaps = 8/526 (1%)

Query: 16  GMEITAEIKPGYDAILSREALELVAALHRTFEPRRQQLLQARAERTKRLDAGERPDFLAE 75
           G+EI   I PG + IL+ EAL  +A L   F   R +LL  R +R   +D G RPDFL E
Sbjct: 7   GLEILGPITPGVETILTPEALAFLAELEGRFGSERLRLLDVRTKRRALIDQGHRPDFLPE 66

Query: 76  TKSVRDGDWTIAPLPQDLQCRRVEITGPVERKMIINALNSGADSYMTDFEDSNAPSWDNQ 135
           T+++R+ DWTIAPLP DL  RRVEITGPV+RKM+INALNSGA  +M DFEDS+ PSW N 
Sbjct: 67  TRAIREADWTIAPLPHDLLDRRVEITGPVDRKMVINALNSGAKVFMADFEDSSCPSWANL 126

Query: 136 ITGHINLKDAVRRTISLEQ--NGKSYTLNDKVATLIVRPRGWHLDEKHVKVDGKRVSGGI 193
           I G  NL+DAVRRTI+ +   +GK Y LNDK A L VRPRGWHL EKHV+ DG+ VSG +
Sbjct: 127 IEGQANLRDAVRRTIAFDDPVSGKKYRLNDKTAVLKVRPRGWHLAEKHVRFDGEPVSGAL 186

Query: 194 FDFALFMVHNAKELVARGSGPYFYLPKMESHLEARLWNDIFVAAQEAVGVPRGTIRATVL 253
           FDFAL+  HNA+EL+ARGSGPYFYLPK+ESH EARLWN++F  A++ + +P G+I+ATVL
Sbjct: 187 FDFALYAFHNAQELLARGSGPYFYLPKLESHFEARLWNEVFSVAEDYLKIPHGSIKATVL 246

Query: 254 IETIVAAFEMDEILYELREHSSGLNAGRWDYIFSAIKKFKADRDFCLADRSQITMTSPFM 313
           +ETI+AAFEMDEILYELR+HS+GLN GRWDYIFS IK F+ D    L DR+++TM +PF+
Sbjct: 247 VETILAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKTFRNDPAAVLPDRAEVTMATPFL 306

Query: 314 RAYALLLLKTCHRRNAPAIGGMSALIPIKNDPAANDKAMSGVRSDKARDAGDGYDGGWVA 373
           ++Y+LL +KTCHRR APAIGGM+A IP+K+DPAAN+ A S VR+DK R+  +G+DG WVA
Sbjct: 307 QSYSLLAVKTCHRRGAPAIGGMAAYIPVKDDPAANETAFSKVRADKEREVSNGHDGTWVA 366

Query: 374 HPGLVPIAMEEFVKVLGDKPNQIGKQRDDVLVTATDLTDFRPEAPITEGGLRNNINVGIH 433
           HPGLVP+A E F   +  KPNQI ++R DV VTA DL    PE P TE GLRNN+ V I 
Sbjct: 367 HPGLVPVAREVFDAYM-RKPNQIDRKRADVSVTAADLLAV-PEGPKTERGLRNNVAVAIG 424

Query: 434 YLGAWLAGNGCVPIHNLMEDAATAEISRSQVWQWIRSPKGKLEDGRKVTAELVRELSAQE 493
           YL AWL G GCVP+ NLMEDAATAEISR+Q+WQW+   +  L+DGR VT ELV E  A+E
Sbjct: 425 YLEAWLRGIGCVPLFNLMEDAATAEISRTQLWQWVHH-RATLDDGRPVTMELVDETIAEE 483

Query: 494 LEKVKQAVGG---DTKPYERAAQIFEEMSTSEQFTDFLTLPLYEEI 536
           L   K  VG    D   YE AA +  ++   + F DFLTLP Y+ I
Sbjct: 484 LAAWKARVGDRAFDHGLYEEAAVMLRDLVERDDFVDFLTLPAYDRI 529


Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 735
Number of extensions: 29
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 534
Length adjustment: 35
Effective length of query: 501
Effective length of database: 499
Effective search space:   249999
Effective search space used:   249999
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate AZOBR_RS03245 AZOBR_RS03245 (malate synthase)
to HMM TIGR01344 (aceB: malate synthase A (EC 2.3.3.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.20491.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20491.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.