Alignments for a candidate for hcs in Azospirillum brasilense Sp245

Align Homocitrate synthase; EC 2.3.3.14 (characterized)
to candidate AZOBR_RS05495 AZOBR_RS05495 homocitrate synthase

Query= SwissProt::P05342
         (385 letters)



>FitnessBrowser__azobra:AZOBR_RS05495
          Length = 381

 Score =  424 bits (1091), Expect = e-123
 Identities = 224/366 (61%), Positives = 270/366 (73%), Gaps = 1/366 (0%)

Query: 3   SVIIDDTTLRDGEQSAGVAFNADEKIAIARALAELGVPELEIGIPSMGEEEREVMHAIAG 62
           S II+DTTLRDGEQ+AGVAF  DEKIAIARAL E GVPELEIGIP+MG EERE + A+A 
Sbjct: 6   STIINDTTLRDGEQTAGVAFTLDEKIAIARALDEAGVPELEIGIPAMGPEEREGIRAVAA 65

Query: 63  LGLSSRLLAWCRLCDVDLAAARSTGVTMVDLSLPVSDLMLHHKLNRDRDWALREVARLVG 122
           LGL +RL+ WCR+ D DL AA    V  V+LS+PVSD+ +  KL R R WAL E+ R V 
Sbjct: 66  LGLKARLMVWCRMHDTDLKAALDCKVGTVNLSMPVSDIHITKKLKRSRAWALAEIERKVK 125

Query: 123 EARMAGLEVCLGCEDASRADLEFVVQVGEVAQAAGARRLRFADTVGVMEPFGMLDRFRFL 182
            AR  GLEV LG ED+SRAD++F++    VAQ AGARR RFADT+GV++PF        L
Sbjct: 126 TARDHGLEVSLGGEDSSRADMDFLIAAATVAQEAGARRFRFADTLGVLDPFQTRACIERL 185

Query: 183 SRRLDMELEVHAHDDFGLATANTLAAVMGGATHINTTVNGLGERAGNAALEECVLALKNL 242
            R  D+E+E+HAHDD GLA AN+LAAV+GGATH+NTTVNGLGERAGNA LEE V++LK L
Sbjct: 186 RRATDLEIEIHAHDDLGLANANSLAAVLGGATHVNTTVNGLGERAGNAPLEEVVVSLKVL 245

Query: 243 HGIDTGIDTRGIPAISALVERASGRQVAWQKSVVGAGVFTHEAGIHVDGLLKHRRNYEGL 302
           +G D G+DTR + AIS LVERAS R VA  KS+VG  VFTHEAGIHVDGLL+ R  Y+  
Sbjct: 246 YGQDCGVDTRALGAISDLVERASNRPVAVNKSIVGDAVFTHEAGIHVDGLLRDRATYQNF 305

Query: 303 NPDELGRSHSLVLGKHSGAHMVRNTYRDLGIELADWQSQALLGRIRAFSTRTKRRSPQPA 362
           +P E+GR H +VLGKHSG   V+  Y  LGI   D  +QA+L R+RA +TR K R+P   
Sbjct: 306 DPAEVGREHRIVLGKHSGTAGVKMAYGQLGIPCDDATAQAVLPRVRALATRAK-RAPTAE 364

Query: 363 ELQDFY 368
           EL+ F+
Sbjct: 365 ELRAFH 370


Lambda     K      H
   0.320    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 447
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 381
Length adjustment: 30
Effective length of query: 355
Effective length of database: 351
Effective search space:   124605
Effective search space used:   124605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS05495 AZOBR_RS05495 (homocitrate synthase)
to HMM TIGR02660 (nifV: homocitrate synthase (EC 2.3.3.14))

Software error:

../bin/blast/fastacmd -i /tmp/list.13487.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13487.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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