Alignments for a candidate for proC in Azospirillum brasilense Sp245

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate AZOBR_RS06245 AZOBR_RS06245 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>FitnessBrowser__azobra:AZOBR_RS06245
          Length = 275

 Score =  177 bits (448), Expect = 3e-49
 Identities = 109/264 (41%), Positives = 155/264 (58%), Gaps = 7/264 (2%)

Query: 10  GAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVADA---DV 66
           G G M  +++ G    G+ A+ +   +P     + + G  A+ V+ S  +A+      DV
Sbjct: 15  GCGKMGGAMLDGWLKAGI-ASSVAVIEPSGLPES-LRGNPAV-VLASGVDALPAGFAPDV 71

Query: 67  VVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTPALL 126
           VVL+VKPQ M +V  A    ++P  + +S+AAG   AS EA LG+   +VR MPNTPA +
Sbjct: 72  VVLAVKPQVMDSVLPAYRALVRPGTVFLSVAAGKTIASFEAALGEGAAIVRSMPNTPAAI 131

Query: 127 RQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLLMQA 186
            +G +    N  V+ AQ      LL AVG   W++DE+ +D VTAVSGSGPAY FL+++A
Sbjct: 132 GRGMTVAVGNPVVTEAQKSLCDSLLRAVGDVAWVEDESLLDPVTAVSGSGPAYVFLMVEA 191

Query: 187 MTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKSFQA 246
           M  AGE  GL  E A RL   T  GA ++   S    A+LR+ VTSPNGTT+AA+    A
Sbjct: 192 MAKAGEAAGLPAELAMRLARATVAGAGELLHQSPTAAADLRKAVTSPNGTTQAALDVLMA 251

Query: 247 -NGFEALVEQALNAASQRSAELAE 269
            +G + L ++A+ AA+ RS ELA+
Sbjct: 252 GDGMQPLFDRAVAAAANRSRELAK 275


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 205
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 275
Length adjustment: 25
Effective length of query: 248
Effective length of database: 250
Effective search space:    62000
Effective search space used:    62000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate AZOBR_RS06245 AZOBR_RS06245 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.22646.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22646.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.