Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate AZOBR_RS06560 AZOBR_RS06560 acetolactate synthase
Query= metacyc::MONOMER-18810 (585 letters) >FitnessBrowser__azobra:AZOBR_RS06560 Length = 587 Score = 633 bits (1633), Expect = 0.0 Identities = 311/570 (54%), Positives = 411/570 (72%), Gaps = 4/570 (0%) Query: 18 EMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAADGYA 77 ++ GA+I++ AL ++GV+ ++GYPGGAVL IYD + +Q +HILVRHEQAAVHAA+GYA Sbjct: 5 KLTGAQIVIKALKDQGVDIIFGYPGGAVLPIYDAIFQQNDIKHILVRHEQAAVHAAEGYA 64 Query: 78 RATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTVGIT 137 R+TGKVG LVTSGPG TNAVTG+ A DSIP+V ++G VPTH IG DAFQE DT GIT Sbjct: 65 RSTGKVGCVLVTSGPGATNAVTGLLDALCDSIPLVCLSGQVPTHLIGNDAFQEADTTGIT 124 Query: 138 RPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKSIDMRS 197 RP KHN+LVKDV LA T+ +AF++A +GRPGPV+VDIPKDV Y P + ++ Sbjct: 125 RPCTKHNYLVKDVNQLARTMHEAFYVARSGRPGPVLVDIPKDVQFADGTYIPPTEVKHKT 184 Query: 198 YNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLAN--ASDELRQLAALTGHPVTNTLM 255 Y P K ++ +A+ L+ A+RP YTGGGVV A A+ L Q +TG P+T+TLM Sbjct: 185 YRPQVKPEIARVEEAIELIATAKRPIFYTGGGVVNAGPIAAKLLTQFVKMTGFPITSTLM 244 Query: 256 GLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKII 315 GLGAFP + Q++GMLGMHGTYEAN+AM NCDV+I IGARFDDRV G + F ++K I Sbjct: 245 GLGAFPASDPQWLGMLGMHGTYEANLAMYNCDVMINIGARFDDRVTGKLSEFAPGSKK-I 303 Query: 316 HIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIEQWRSVD 375 H+DIDPSSI+K V VDIPIVG+ VL+++I KA + + AL +WW Q+E WR+ + Sbjct: 304 HVDIDPSSINKNVAVDIPIVGDAGAVLEDMIRIWKARQKRADQTALKEWWGQVEGWRARN 363 Query: 376 CLKYDRSSEIIKPQYVVEKIWELTKG-DAFICSDVGQHQMWAAQFYKFDEPRRWINSGGL 434 CL Y+R+ +IKPQY +E++ E +G + ++ ++VGQHQMWAAQF FDEP RW+ SGGL Sbjct: 364 CLNYNRTEAVIKPQYALERLREALRGKNHYVTTEVGQHQMWAAQFLPFDEPNRWMTSGGL 423 Query: 435 GTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLGM 494 GTMG GLP A+G + A P+ VV ++GE S M +QE+ T +QY PVKI LNN Y+GM Sbjct: 424 GTMGYGLPAAIGAQLAHPDAIVVDVSGEASFLMNMQEIGTAVQYRAPVKIFILNNKYMGM 483 Query: 495 VRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTVF 554 VRQWQE+ + +RYS+SY +ALPDFVKLAE++G VG+R ++V+ + + + DR Sbjct: 484 VRQWQELLHGSRYSNSYSEALPDFVKLAESWGCVGLRATTVAEVDEVIEKMLAVTDRPCI 543 Query: 555 LDFQTDPTENVWPMVQAGKGISEMLLGAED 584 +D DP EN +PM+ GK +E+L G ED Sbjct: 544 IDIAVDPKENCFPMIPGGKAHNEILFGPED 573 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 946 Number of extensions: 24 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 585 Length of database: 587 Length adjustment: 37 Effective length of query: 548 Effective length of database: 550 Effective search space: 301400 Effective search space used: 301400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate AZOBR_RS06560 AZOBR_RS06560 (acetolactate synthase)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.5128.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5128.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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