Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate AZOBR_RS06565 AZOBR_RS06565 acetolactate synthase
Query= BRENDA::P00894
(163 letters)
>FitnessBrowser__azobra:AZOBR_RS06565
Length = 168
Score = 125 bits (314), Expect = 3e-34
Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 3/159 (1%)
Query: 2 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPT-LSRMTIQTVGDEKVLEQI 60
+ ++VL++NE G L+RVIGLFS RGYNIESLTVA ++ LSR+T+ T G V+EQI
Sbjct: 7 KHTIAVLVDNEPGVLARVIGLFSGRGYNIESLTVAEVNNADHLSRITLVTSGTRMVVEQI 66
Query: 61 EKQLHKLVDVLRVSEL-GQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 119
+ QL +LV V +V +L +G VERE+ LVK+ +G R E R +IF+ +++D T +
Sbjct: 67 KAQLDRLVPVHKVHDLTDEGPSVERELALVKVAGTGERRIEALRLADIFKAKVVDATLTS 126
Query: 120 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRG 158
+ +L GT+ ++D F+ + + +VE +R+GVV +S+G
Sbjct: 127 FVFELTGTTAEVDDFVGLMAQLG-LVEASRTGVVAMSKG 164
Lambda K H
0.318 0.136 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 8
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 168
Length adjustment: 18
Effective length of query: 145
Effective length of database: 150
Effective search space: 21750
Effective search space used: 21750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)
Align candidate AZOBR_RS06565 AZOBR_RS06565 (acetolactate synthase)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.7620.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7620.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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