Alignments for a candidate for prs in Azospirillum brasilense Sp245

Align Ribose-phosphate pyrophosphokinase; RPPK; EC 2.7.6.1; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase (uncharacterized)
to candidate AZOBR_RS06995 AZOBR_RS06995 ribose-phosphate pyrophosphokinase

Query= curated2:Q8TUT6
         (291 letters)



>FitnessBrowser__azobra:AZOBR_RS06995
          Length = 297

 Score =  142 bits (357), Expect = 1e-38
 Identities = 99/278 (35%), Positives = 140/278 (50%), Gaps = 7/278 (2%)

Query: 14  RRLAEELDAELAPVEEDRFPDGEQIVRVPPELDGTVVVVHSMSPPQDENLVKAIITLDAA 73
           RRLAE L+      E  RFPDGE +VR+P  ++   VV  S+  P D+ LV+  +     
Sbjct: 18  RRLAEALNVPCHIAELHRFPDGESLVRLPEAVE-RAVVYRSLDRPNDK-LVELTLAASVL 75

Query: 74  RENGAEEVIAIVPYMAYSRQDRRFEPGEPVSFRAVARAVSANADALITVD--LHEPGTLK 131
           R +GA E+  + PYMAY RQD  F PGEPVS   V   +    D  + V+  LH   TL 
Sbjct: 76  RRHGATELCLVAPYMAYMRQDAVFRPGEPVSQAVVGDWLGRLFDRFVCVEPHLHRTHTLD 135

Query: 132 YFDV--PAENVSAAEELGKYLAERFEGEDLVVIGPDEGARELAREVASICGVEYDHLEKK 189
              V  P+  +S A  + + L       D V++GPDE A  L   VA   G+      K+
Sbjct: 136 EVFVGRPSVCLSGAGAIAERLRRDGTAPDAVIVGPDEEAAPLVEVVAGPLGLTALVGRKE 195

Query: 190 RLSGDEVEIH-PKELDVEGRTVVLVDDMIDTGGTMVEAARALRDQGAGTLYAACTHALLT 248
           R    +V +  P +  + GR VV+VDD+I +G T+   ARA R  GA ++     HAL  
Sbjct: 196 RRGDRDVTVTLPADAPLAGRPVVIVDDVISSGETIFSCARAARAAGAASVRVFGVHALFD 255

Query: 249 RNAATRLLASGFEDIIATDTVPNPFEKVSVAPPVAEAV 286
              A R  A G    ++ D VP+P   + +A  +A+A+
Sbjct: 256 AAVAARFAAEGLGTPLSCDGVPHPSNDLPLARLIADAL 293


Lambda     K      H
   0.314    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 201
Number of extensions: 14
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 297
Length adjustment: 26
Effective length of query: 265
Effective length of database: 271
Effective search space:    71815
Effective search space used:    71815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate AZOBR_RS06995 AZOBR_RS06995 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.3250.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3250.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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