Alignments for a candidate for hutG' in Azospirillum brasilense Sp245

Align N-formylglutamate deformylase (EC 3.5.1.68) (characterized)
to candidate AZOBR_RS08115 AZOBR_RS08115 N-formylglutamate amidohydrolase

Query= reanno::acidovorax_3H11:Ac3H11_2548
         (270 letters)



>FitnessBrowser__azobra:AZOBR_RS08115
          Length = 275

 Score =  268 bits (685), Expect = 9e-77
 Identities = 137/268 (51%), Positives = 173/268 (64%), Gaps = 5/268 (1%)

Query: 8   FTFHQGTAPLLVSMPHAGTYVPPVLAARFTDEARQVPDTDWHMERLYAFAKDMGASILVA 67
           F F  G  P+L+S+PH GT VPP +AA  TD A  +PDTDWH++RLY FA  +G   L  
Sbjct: 4   FRFQPGETPVLLSIPHVGTVVPPDIAATMTDSALAMPDTDWHLDRLYHFAPALGIGFLKP 63

Query: 68  THSRYVVDLNRPPDGASLYPG-QSVTGLCPVDTFDDTPIYAQGDVPDDAEVAARRDAVWA 126
             SRYV+DLNR PD     PG  S T LCP+ TFD  P+Y  G  PD  EV  R  A W 
Sbjct: 64  ILSRYVIDLNRDPDSDLPIPGGASSTELCPLTTFDHQPVYRPGQEPDAVEVRRRIGAYWR 123

Query: 127 PYHAQLRAELSRIRAQHGVAVLWDAHSIRSVLPRFFEGKLPDLNLGTADGASCDPALAQA 186
           PYH QL  EL  ++ + GVAVL+DAHSIRS +PRFF+G++ D +LGTA+G S  PAL   
Sbjct: 124 PYHEQLNGELQALKERFGVAVLFDAHSIRSRVPRFFDGQIQDFSLGTAEGTSASPALVGR 183

Query: 187 LLAIAQSAPGYTGVLNGRFKGGHITRHYGQPAQNIHAVQLEMTQCSYMQEALPFDYLPEV 246
           ++ +  +   ++ V NGRFKGG ITR YG PA NIH++QLE++Q +YM E  PF +  E 
Sbjct: 184 VMNVLTATGRFSSVQNGRFKGGFITRRYGNPADNIHSIQLELSQLTYMDEEAPFGFREES 243

Query: 247 AAEVQPHLERLL----EAALAFAAARRK 270
           A +V+P LERLL    E A   AA RR+
Sbjct: 244 ARQVRPTLERLLSLVVEWAWENAAGRRR 271


Lambda     K      H
   0.321    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 236
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 275
Length adjustment: 25
Effective length of query: 245
Effective length of database: 250
Effective search space:    61250
Effective search space used:    61250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate AZOBR_RS08115 AZOBR_RS08115 (N-formylglutamate amidohydrolase)
to HMM TIGR02017 (hutG: N-formylglutamate deformylase (EC 3.5.1.68))

Software error:

../bin/blast/fastacmd -i /tmp/list.30661.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30661.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.