Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate AZOBR_RS08645 AZOBR_RS08645 phosphoribosyl-AMP cyclohydrolase
Query= SwissProt::O26347 (138 letters) >FitnessBrowser__azobra:AZOBR_RS08645 Length = 144 Score = 131 bits (329), Expect = 5e-36 Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 2/118 (1%) Query: 19 NGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQR 78 N + L+ A+AQ TGE+LM+A+MNR+A+ TL TG YWS SR LW KGE+SG +QR Sbjct: 25 NADGLVPAIAQAEGTGEILMMAWMNRDAVLETLRTGRVCYWSRSRKGLWRKGETSGQMQR 84 Query: 79 VKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSIDGDELKVREDAVKVFDPEEIYG 136 +KD VDCDGD ++L VEQ+G ACHTG RSCFYR++ +L++ +D DP +YG Sbjct: 85 LKDFRVDCDGDTLLLIVEQDGVACHTGRRSCFYRALRDGKLEIVQDVET--DPSVLYG 140 Lambda K H 0.318 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 102 Number of extensions: 2 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 138 Length of database: 144 Length adjustment: 15 Effective length of query: 123 Effective length of database: 129 Effective search space: 15867 Effective search space used: 15867 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)
Align candidate AZOBR_RS08645 AZOBR_RS08645 (phosphoribosyl-AMP cyclohydrolase)
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.14905.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14905.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.