Align Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; DAHP synthase 2; PhDAHP2; Phospho-2-keto-3-deoxyheptonate aldolase 2; EC 2.5.1.54 (characterized)
to candidate AZOBR_RS09730 AZOBR_RS09730 phospho-2-dehydro-3-deoxyheptonate aldolase
Query= SwissProt::A0A067XGX8
(512 letters)
>FitnessBrowser__azobra:AZOBR_RS09730
Length = 461
Score = 580 bits (1495), Expect = e-170
Identities = 275/447 (61%), Positives = 352/447 (78%), Gaps = 1/447 (0%)
Query: 61 KWNLESWKTKPAFQLPDYPDKVELESVLKTLSTYPPIVFAGEARNLEEKLGEAALGNAFL 120
+W+ +SW++KPA QLP YPD ++E+V + LS+YPP+VFAGEAR L++ L AA GNAFL
Sbjct: 4 RWSPDSWRSKPAKQLPTYPDPSKVEAVEQRLSSYPPLVFAGEARRLKDSLAAAAAGNAFL 63
Query: 121 LQGGDCAESFKEFSANNIRDTFRVMLQMGVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEE 180
LQGGDCAESF EF NNIRDTFRV+LQM VVL FG +PV+KVGRMAGQFAKPRS E
Sbjct: 64 LQGGDCAESFAEFHPNNIRDTFRVLLQMAVVLTFGAAIPVVKVGRMAGQFAKPRSADTEV 123
Query: 181 KDGVKLPSYRGDNVNGDAFDEKSRIPDPHRMVRAYTQSVATLNLLRAFASGGYAAMQRVN 240
+G++LPSYRGD +NG F +R+PDP RM++AYTQ+ ATLNLLRAF+ GGYA + +V+
Sbjct: 124 LEGIELPSYRGDIINGFDFTPDARVPDPERMMQAYTQAAATLNLLRAFSQGGYADLHKVH 183
Query: 241 QWNLDFTDQSEQGDRYRELAHRVDEAMGFMTAAGLTVDHTI-MTTTDFWTSHECLLLPYE 299
QW L F ++S G+++RE+A+R+DE +GFM A G+T T + T+F+TSHE LLLP+E
Sbjct: 184 QWTLGFVERSPAGEQFREIANRLDETLGFMAACGITAQTTPQIRETEFFTSHEALLLPFE 243
Query: 300 QALTREDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGIANPLGIKVSHKMDPDELVK 359
QA+TR DST+G +YD SAHM+W+G+RTRQLDGAHVEFLRG+ NP+G+K DPDEL++
Sbjct: 244 QAMTRVDSTTGDWYDVSAHMLWIGDRTRQLDGAHVEFLRGVKNPIGLKCGPTTDPDELIR 303
Query: 360 LIDILNPQNKPGRITVITRMGADNMRVKLPHLIRAVRGAGQIVTWVSDPMHGNTTKAPCG 419
LID+LNP N+PGR+T+I RMGAD + K P L+R V+ G++V W SDPMHGNT K+ G
Sbjct: 304 LIDLLNPTNEPGRLTLIVRMGADKVAEKFPPLLRKVQREGRVVVWSSDPMHGNTVKSSSG 363
Query: 420 LKTRSFDSIRAELRAFFDVHEQEGSYPGGVHLEMTGQNVTECVGGSRTITYNDLSSRYHT 479
KTR + + +E R FF VHE EG++ GGVH E+TGQ+VTEC GG++ IT + L+ RYHT
Sbjct: 364 YKTRPVEKVLSEARDFFAVHEAEGTHAGGVHFELTGQDVTECTGGAQAITDHKLALRYHT 423
Query: 480 HCDPRLNASQALELAFAIAERLRRRRL 506
CDPRLNASQALELAF +AE L+R RL
Sbjct: 424 ACDPRLNASQALELAFLLAEELKRARL 450
Lambda K H
0.319 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 716
Number of extensions: 21
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 461
Length adjustment: 34
Effective length of query: 478
Effective length of database: 427
Effective search space: 204106
Effective search space used: 204106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Align candidate AZOBR_RS09730 AZOBR_RS09730 (phospho-2-dehydro-3-deoxyheptonate aldolase)
to HMM TIGR01358 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))
../bin/blast/fastacmd -i /tmp/list.454.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.454.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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