Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate AZOBR_RS10500 AZOBR_RS10500 homoserine kinase
Query= reanno::Korea:Ga0059261_3253 (319 letters) >FitnessBrowser__azobra:AZOBR_RS10500 Length = 327 Score = 278 bits (710), Expect = 2e-79 Identities = 139/310 (44%), Positives = 197/310 (63%), Gaps = 2/310 (0%) Query: 1 MAVYTQVSAEALAGFLARYDVGELVSAKGIAEGVENSNYLVETTRDRFILTLYEKRVEAA 60 MAVYT+V+ + L F+A+YD+G ++S KGIAEGVENSN+L+ T R +ILTLYEKR Sbjct: 1 MAVYTEVTDDELNAFIAQYDLGAVLSCKGIAEGVENSNFLLVTERGPYILTLYEKRTRRE 60 Query: 61 DLPYFMGLLDHLAAKGLPVPPAIKDRGGVEIQELNGRPACLIKFLSGISLSHPTPAQARA 120 DLP+F+GL++HLA KG+ P ++ G+ ++EL GRPA ++ FL+G+ TP Sbjct: 61 DLPFFLGLMEHLADKGIACPLPVQGTDGLALRELAGRPAVIVTFLAGMWPRRITPHHCAE 120 Query: 121 AGEAMAQMHRAVADFPLDRPNSMGVDTWQPLFEKCGHSLDQIVPGLYDDLGFAIARVVPA 180 G A+A++H AVADF ++RPN++ +D W+ L KC D++ L L +A + Sbjct: 121 LGTALARLHLAVADFRMERPNALSLDGWKDLAGKCAPRADEVARDLRATLEAELAALEAN 180 Query: 181 WTRNDFDRCAIHADLFPDNVLMRGDQVTGLIDFYFACTDIRVYDLAVMHSAWSFDAHGRN 240 W IHADLFPDNV RGD ++GLIDFYFAC D YD+A+ +AW F+ G + Sbjct: 181 WPAG-LPSGVIHADLFPDNVFFRGDGLSGLIDFYFACNDFLAYDIAICMNAWCFEVDG-S 238 Query: 241 YDPAVGDALIAGYEASFPLTEVERAAFPTLAAGACIRFSLSRAWDWLNTPADALVMRKDP 300 ++ L+ Y+ PL+ E AA P L G+ +RF L+R +DWLN P A V KDP Sbjct: 239 FNATKARMLLTSYQKVRPLSPAEMAALPWLCRGSALRFLLTRLYDWLNHPPGAFVRPKDP 298 Query: 301 LAYVRRLKHY 310 L Y+R+L+ + Sbjct: 299 LEYLRKLRFH 308 Lambda K H 0.323 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 285 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 319 Length of database: 327 Length adjustment: 28 Effective length of query: 291 Effective length of database: 299 Effective search space: 87009 Effective search space used: 87009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 48 (23.1 bits)
Align candidate AZOBR_RS10500 AZOBR_RS10500 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))
../bin/blast/fastacmd -i /tmp/list.398.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.398.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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