Alignments for a candidate for icd in Azospirillum brasilense Sp245

Align isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) (characterized)
to candidate AZOBR_RS10995 AZOBR_RS10995 isocitrate dehydrogenase

Query= BRENDA::B7GQR3
         (406 letters)



>FitnessBrowser__azobra:AZOBR_RS10995
          Length = 407

 Score =  602 bits (1551), Expect = e-177
 Identities = 288/405 (71%), Positives = 341/405 (84%), Gaps = 1/405 (0%)

Query: 1   MAKIKVEGTVVELDGDEMTRVIWKDIKDRLILPYLDVNLDYYDLGIEHRDETDDQVTIDA 60
           M KIKV   VVELDGDEMTR+IW+ IKD+LILPYLDV+L YYDL +E+RD+TDD+VT+++
Sbjct: 1   MTKIKVANPVVELDGDEMTRIIWQFIKDKLILPYLDVDLKYYDLSVENRDKTDDRVTVES 60

Query: 61  AHAIQKHHVGVKCATITPDEARVKEFGLKKMWKSPNGTIRNILGGTIFREPIVMSNVPRL 120
           A+AI+++ VGVKCATITPDEARV EF LKKMWKSPNGTIRNILGGT+FREPIV SNVPR 
Sbjct: 61  ANAIKQYGVGVKCATITPDEARVTEFNLKKMWKSPNGTIRNILGGTVFREPIVCSNVPRY 120

Query: 121 VPGWTKPIVVARHAFGDQYKATDFKVPGAGQLTVTFTPDDGSEPIQHVVYNYGEDGGVAQ 180
           VPGWTKPI++ RHAFGDQYKATDF VPG G+LT+ + P+ G EPI+  VY++   G VA 
Sbjct: 121 VPGWTKPIIIGRHAFGDQYKATDFVVPGKGKLTIKWVPEGGGEPIEQEVYDFPASG-VAM 179

Query: 181 VQYNVNDSIRGFARACFNYGLMRHYPVYLSTKNTILKAYDGQFKDIFAEVFETEYKDKYA 240
             YN+++SI GFA + F YGL R YPVYLSTKNTILKAYDG+FKDIF +VF+  Y  ++ 
Sbjct: 180 GMYNLDESIEGFAHSSFMYGLERGYPVYLSTKNTILKAYDGRFKDIFQKVFDEHYAAQFK 239

Query: 241 EAGLTYEHRLIDDMVASSLKWHGGYIWACKNYDGDVQSDSVAQGFGSLGLMTSVLMTPDG 300
             GL YEHRLIDDMVAS+LKW GG++WACKNYDGDVQSD VAQGFGSLGLMTSVL+TPDG
Sbjct: 240 AKGLVYEHRLIDDMVASALKWEGGFVWACKNYDGDVQSDIVAQGFGSLGLMTSVLITPDG 299

Query: 301 QTVESEAAHGTVTRHYRRWQKGEKTSTNPIASIFAWTGGLKHRADLDGTPEVRHFAKTLE 360
           +TVE+EAAHGTVTRHYR  QKG++TSTNPIASI+AWT GL +R   D TP+V  FA+TLE
Sbjct: 300 KTVEAEAAHGTVTRHYREHQKGKETSTNPIASIYAWTQGLAYRGKFDNTPDVVKFAETLE 359

Query: 361 KVIVDTVEGGQMTKDLAMLIGPDEPWLDTDGFMNALDENLAKALA 405
           +V V+TVE G MTKDLA+LIGPD+PWL T  F++ LDENL K +A
Sbjct: 360 RVCVETVESGFMTKDLAILIGPDQPWLTTKQFLDKLDENLQKKMA 404


Lambda     K      H
   0.318    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 689
Number of extensions: 23
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 407
Length adjustment: 31
Effective length of query: 375
Effective length of database: 376
Effective search space:   141000
Effective search space used:   141000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS10995 AZOBR_RS10995 (isocitrate dehydrogenase)
to HMM TIGR00127 (isocitrate dehydrogenase, NADP-dependent (EC 1.1.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.6763.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6763.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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