Alignments for a candidate for nagA in Azospirillum brasilense Sp245

Align N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (characterized)
to candidate AZOBR_RS11675 AZOBR_RS11675 N-acetylglucosamine 6-phosphate deacetylase

Query= reanno::Caulo:CCNA_00452
         (378 letters)



>FitnessBrowser__azobra:AZOBR_RS11675
          Length = 383

 Score =  365 bits (937), Expect = e-105
 Identities = 195/377 (51%), Positives = 243/377 (64%), Gaps = 4/377 (1%)

Query: 4   ALINGRVLTESGVVEGKAVLVKDGLILDVIEAAQTPSDAKPRDLKGGLLVPGFIDTQVNG 63
           AL+N  + T   V+ G A+L+    I  ++     P +A   DL GG+L PGFID QVNG
Sbjct: 3   ALVNATLHTGDSVLAGAALLIDGPAIAAIVAPEAIPPEAAVIDLGGGILAPGFIDLQVNG 62

Query: 64  GGGVLFNDAPTVETIATIGAAHRRFGTTGFLPTLISDDLRVVDQAMRATEEAIARGVPGV 123
           GGG LFND P + T+  I  AHRRFGTTG LPTLI+D       A+ A   A+A+G+PGV
Sbjct: 63  GGGALFNDTPDLPTLRRIAEAHRRFGTTGLLPTLITDSAEKRAVAVAAVRAALAQGMPGV 122

Query: 124 LGLHIEGPFLNPKRKGIHDAGKFRVIDDEALALLTSLKRGKTLVTLAPERTTPQIIRRLA 183
           LG+H+EGP + P+R+G+HDA      D + LALL  L     LVTLAPE   P+ IRRLA
Sbjct: 123 LGIHLEGPHIAPERRGVHDARFIAPPDADDLALLGGLSGLPALVTLAPEAVPPEPIRRLA 182

Query: 184 DAGVIVAAGHTNALYATMRQALEHGLTGFTHLFNAMSPLTSREPGAVGAALESPDAWCGI 243
            AG+ +AAGH+ A +A  +     G+TG THLFNAMSPL SREPG VGAALE    WCGI
Sbjct: 183 AAGLRIAAGHSTATWAQAKAGFAAGITGVTHLFNAMSPLGSREPGMVGAALEDDAVWCGI 242

Query: 244 IVDGRHVDPVVLKIALRTRALDRFMLVTDAMPTVGLPDK----RFNLQGRDIRVVDGVCV 299
           IVDG HV    +++A + +   R  LVTDAMP VG P+      F L G +IRV DG CV
Sbjct: 243 IVDGHHVHDASVRLAWKAKTPGRLFLVTDAMPPVGAPEDHPAGNFQLYGEEIRVEDGRCV 302

Query: 300 DDHGTLAGSDLDMIGAVRNAIDLLDLSLDDAVMMASHAPASFLGLGHGRGLIAPGYAADL 359
              GTLAGS LDM  AVRNA++ + + LD+A+ MAS  PA F+G+   RG I PG AADL
Sbjct: 303 TADGTLAGSALDMATAVRNAVERVGIPLDEALRMASAYPADFMGMAGRRGRIRPGLAADL 362

Query: 360 CLLNDRLEVAATWIDGQ 376
             L++RL V ATWI G+
Sbjct: 363 VHLDERLRVRATWISGK 379


Lambda     K      H
   0.321    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 538
Number of extensions: 26
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 383
Length adjustment: 30
Effective length of query: 348
Effective length of database: 353
Effective search space:   122844
Effective search space used:   122844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS11675 AZOBR_RS11675 (N-acetylglucosamine 6-phosphate deacetylase)
to HMM TIGR00221 (nagA: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25))

Software error:

../bin/blast/fastacmd -i /tmp/list.22499.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22499.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.