Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate AZOBR_RS12025 AZOBR_RS12025 3-dehydroquinate dehydratase
Query= BRENDA::W6JLW3
(160 letters)
>FitnessBrowser__azobra:AZOBR_RS12025
Length = 149
Score = 182 bits (461), Expect = 3e-51
Identities = 84/141 (59%), Positives = 110/141 (78%)
Query: 17 ITVLNGPNLNMLGLRQPGIYGHATLDDVEQVCIQAAERLDVAIDFRQTNGEGELVSWVQE 76
+ VLNGPNLNMLG+R+P IYG TLDD+E C + AE+L +AIDFRQ+N EGELVSW+Q+
Sbjct: 7 VLVLNGPNLNMLGVREPHIYGSMTLDDLEGACQERAEQLGLAIDFRQSNHEGELVSWIQQ 66
Query: 77 CRGRADGIVINPAAYGHTSIALLDALLAVELPVVEVHISNIHRREPFRHHTYVSQAAIGV 136
R DGIVIN AY HTS+A++DAL+ ELP+VEVH+SNI++RE RHH+++S A G+
Sbjct: 67 ARTEHDGIVINAGAYSHTSVAIMDALILSELPIVEVHLSNIYKREAIRHHSHISAVAKGM 126
Query: 137 ICGLGVRGYAHALQAITDMIE 157
ICG G GY AL A+ +++E
Sbjct: 127 ICGFGPHGYLLALDAMANILE 147
Lambda K H
0.322 0.139 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 149
Length adjustment: 17
Effective length of query: 143
Effective length of database: 132
Effective search space: 18876
Effective search space used: 18876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)
Align candidate AZOBR_RS12025 AZOBR_RS12025 (3-dehydroquinate dehydratase)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.31851.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31851.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.