Align Carbamate kinase; EC 2.7.2.2 (characterized, see rationale)
to candidate AZOBR_RS13245 AZOBR_RS13245 carbamate kinase
Query= uniprot:P13982 (310 letters) >FitnessBrowser__azobra:AZOBR_RS13245 Length = 317 Score = 418 bits (1074), Expect = e-121 Identities = 214/306 (69%), Positives = 246/306 (80%), Gaps = 6/306 (1%) Query: 1 MRIVVALGGNALLRRGEPMTADNQRENVRIAAEQIAKVAPGNELVIAHGNGPQVGLLALQ 60 MR+VVALGGNALL+RGEPMTAD QR N+RIAAE +A VA ++LVI+HGNGPQVGLLALQ Sbjct: 1 MRVVVALGGNALLKRGEPMTADVQRRNIRIAAEAMAPVAREHQLVISHGNGPQVGLLALQ 60 Query: 61 GAAYDKVSPYPLDVLGAETEGMIGYMIEQEMGNLLPFEVPFATILTQVEVDGKDPAFQNP 120 GAAY YPLDVLGAETEGMIGYMIEQE+GNLLPFEVPFAT+LT VEVDG DPAF +P Sbjct: 61 GAAYRPDEAYPLDVLGAETEGMIGYMIEQELGNLLPFEVPFATLLTMVEVDGDDPAFGDP 120 Query: 121 TKPIGPVYSREEAERLAAEKGWSIAPDGDKFRRVVPSPRPKRIFEIRPVKWLLEKGTIVI 180 TK +GPVY EA+R+AAEKGW DG +RRVVPSP PKRIFEIRP++WLL++GTIVI Sbjct: 121 TKFVGPVYGAAEAQRIAAEKGWVFKADGASWRRVVPSPAPKRIFEIRPIRWLLDQGTIVI 180 Query: 181 CAGGGGIPTMYDEA----GKK--LSGVEAVIDKDLCSSLLAQELVADILIIATDVDAAYV 234 CAGGGGIPTMY A GK+ L GVEAVIDKDLCS LLA+EL AD+LI+ATD +A ++ Sbjct: 181 CAGGGGIPTMYQPAMHQPGKERTLVGVEAVIDKDLCSELLARELGADLLIMATDAEAVFL 240 Query: 235 DWGKPTQKAIAQAHPDELERLGFAAGSMGPKVQAAIEFARATGKDAVIGSLADIVAITEG 294 WG P +AI +A PD + R F AGSMGPKV AA FA ATG+ A IG+LADI AI G Sbjct: 241 GWGTPDARAIHRASPDAMGRYSFPAGSMGPKVDAACRFATATGRTAAIGALADIPAIVRG 300 Query: 295 KAGTRV 300 + GT + Sbjct: 301 EKGTLI 306 Lambda K H 0.317 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 372 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 310 Length of database: 317 Length adjustment: 27 Effective length of query: 283 Effective length of database: 290 Effective search space: 82070 Effective search space used: 82070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate AZOBR_RS13245 AZOBR_RS13245 (carbamate kinase)
to HMM TIGR00746 (arcC: carbamate kinase (EC 2.7.2.2))
../bin/blast/fastacmd -i /tmp/list.19939.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19939.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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