Alignments for a candidate for arcC in Azospirillum brasilense Sp245

Align Carbamate kinase; EC 2.7.2.2 (characterized, see rationale)
to candidate AZOBR_RS13245 AZOBR_RS13245 carbamate kinase

Query= uniprot:P13982
         (310 letters)



>FitnessBrowser__azobra:AZOBR_RS13245
          Length = 317

 Score =  418 bits (1074), Expect = e-121
 Identities = 214/306 (69%), Positives = 246/306 (80%), Gaps = 6/306 (1%)

Query: 1   MRIVVALGGNALLRRGEPMTADNQRENVRIAAEQIAKVAPGNELVIAHGNGPQVGLLALQ 60
           MR+VVALGGNALL+RGEPMTAD QR N+RIAAE +A VA  ++LVI+HGNGPQVGLLALQ
Sbjct: 1   MRVVVALGGNALLKRGEPMTADVQRRNIRIAAEAMAPVAREHQLVISHGNGPQVGLLALQ 60

Query: 61  GAAYDKVSPYPLDVLGAETEGMIGYMIEQEMGNLLPFEVPFATILTQVEVDGKDPAFQNP 120
           GAAY     YPLDVLGAETEGMIGYMIEQE+GNLLPFEVPFAT+LT VEVDG DPAF +P
Sbjct: 61  GAAYRPDEAYPLDVLGAETEGMIGYMIEQELGNLLPFEVPFATLLTMVEVDGDDPAFGDP 120

Query: 121 TKPIGPVYSREEAERLAAEKGWSIAPDGDKFRRVVPSPRPKRIFEIRPVKWLLEKGTIVI 180
           TK +GPVY   EA+R+AAEKGW    DG  +RRVVPSP PKRIFEIRP++WLL++GTIVI
Sbjct: 121 TKFVGPVYGAAEAQRIAAEKGWVFKADGASWRRVVPSPAPKRIFEIRPIRWLLDQGTIVI 180

Query: 181 CAGGGGIPTMYDEA----GKK--LSGVEAVIDKDLCSSLLAQELVADILIIATDVDAAYV 234
           CAGGGGIPTMY  A    GK+  L GVEAVIDKDLCS LLA+EL AD+LI+ATD +A ++
Sbjct: 181 CAGGGGIPTMYQPAMHQPGKERTLVGVEAVIDKDLCSELLARELGADLLIMATDAEAVFL 240

Query: 235 DWGKPTQKAIAQAHPDELERLGFAAGSMGPKVQAAIEFARATGKDAVIGSLADIVAITEG 294
            WG P  +AI +A PD + R  F AGSMGPKV AA  FA ATG+ A IG+LADI AI  G
Sbjct: 241 GWGTPDARAIHRASPDAMGRYSFPAGSMGPKVDAACRFATATGRTAAIGALADIPAIVRG 300

Query: 295 KAGTRV 300
           + GT +
Sbjct: 301 EKGTLI 306


Lambda     K      H
   0.317    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 372
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 317
Length adjustment: 27
Effective length of query: 283
Effective length of database: 290
Effective search space:    82070
Effective search space used:    82070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate AZOBR_RS13245 AZOBR_RS13245 (carbamate kinase)
to HMM TIGR00746 (arcC: carbamate kinase (EC 2.7.2.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.649.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.649.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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