Alignments for a candidate for argI in Azospirillum brasilense Sp245

Align Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate AZOBR_RS13250 AZOBR_RS13250 ornithine carbamoyltransferase

Query= SwissProt::P08308
         (336 letters)



>FitnessBrowser__azobra:AZOBR_RS13250
          Length = 334

 Score =  490 bits (1262), Expect = e-143
 Identities = 235/335 (70%), Positives = 283/335 (84%), Gaps = 1/335 (0%)

Query: 1   MAFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRT 60
           M+FN+ NR+LL++  ++ RE RY+LDL+RDLKRAKY  TEQQHL+ K I LIFEKTSTRT
Sbjct: 1   MSFNLRNRSLLTVQDYTPREFRYVLDLARDLKRAKYARTEQQHLRGKEICLIFEKTSTRT 60

Query: 61  RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAK 120
           RCAFEVA +DQGANVTY+DP  SQIGHKES KDTARVLGRMYDAIEYRG  Q  VE+LAK
Sbjct: 61  RCAFEVACHDQGANVTYLDPAGSQIGHKESFKDTARVLGRMYDAIEYRGAAQGGVEQLAK 120

Query: 121 FAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKL 180
           +AGVPV+NGLTDEYHPTQMLADV+TMREHSDKP+ DI+YAY+GD R+NMG+SL+++G  +
Sbjct: 121 YAGVPVYNGLTDEYHPTQMLADVMTMREHSDKPITDITYAYVGDTRSNMGHSLMIVGCLM 180

Query: 181 GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEP 240
           GMDVRI  P++LWP +E+ A  +K A  SGA+LT+T++  EAV GVDF+HTDVWVSMGEP
Sbjct: 181 GMDVRICGPQSLWPSEEYTAIARKLAAASGARLTITDNTAEAVAGVDFIHTDVWVSMGEP 240

Query: 241 VEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGI 300
            + W ERI  L PYQVN E+M A+GNP+ KFMHCLPAFH+SET +G+QIAE Y  + NG+
Sbjct: 241 KDVWRERIALLKPYQVNPELMAASGNPQVKFMHCLPAFHDSETTLGRQIAEDY-GMPNGL 299

Query: 301 EVTEDVFESPYNIAFEQAENRMHTIKAILVSTLAD 335
           EVT +VFES  NIAFEQAENRMHTIKA+LV+TL +
Sbjct: 300 EVTNEVFESEANIAFEQAENRMHTIKALLVATLGE 334


Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 410
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 334
Length adjustment: 28
Effective length of query: 308
Effective length of database: 306
Effective search space:    94248
Effective search space used:    94248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate AZOBR_RS13250 AZOBR_RS13250 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.8494.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8494.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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