Alignments for a candidate for leuD in Azospirillum brasilense Sp245

Align 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate AZOBR_RS14135 AZOBR_RS14135 isopropylmalate isomerase

Query= SwissProt::Q1MA52
         (202 letters)



>FitnessBrowser__azobra:AZOBR_RS14135
          Length = 203

 Score =  307 bits (787), Expect = 7e-89
 Identities = 144/200 (72%), Positives = 168/200 (84%)

Query: 1   MDKFVKLTGVAAPLPVVNVDTDMIIPKDYLKTIKRTGLGTGLFAEARYNEDGSENPDFVL 60
           M+KF  LTGVAAPLP++NVDTDMIIPK +LKTIKRTGLG  LF E RY  DG+E  +FVL
Sbjct: 1   MEKFTVLTGVAAPLPMINVDTDMIIPKQFLKTIKRTGLGKHLFDEMRYTPDGAEVAEFVL 60

Query: 61  NKPAYRDAKILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIK 120
           NKPAYR AKILV+GDNFGCGSSREHAPWAL DFGIRC+I+ SFADIF+NNCFKNGILPIK
Sbjct: 61  NKPAYRSAKILVSGDNFGCGSSREHAPWALADFGIRCIIAPSFADIFFNNCFKNGILPIK 120

Query: 121 VSQEDLDKLMDDASRGSNAILTVDLENLEITGPDGGLIKFDLDEFKRHCLLNGLDDIGLT 180
           + +E +D L+DDASRGSNAI++VDLE  EITGPDGG I F++D F++HCLLNGLDDIGLT
Sbjct: 121 LPKEQVDLLLDDASRGSNAIVSVDLEKQEITGPDGGKISFEVDPFRKHCLLNGLDDIGLT 180

Query: 181 LEKGKAIDSFEKKNAASHPW 200
           +++   ID +E K     PW
Sbjct: 181 MQQAAFIDQYEGKQRGGQPW 200


Lambda     K      H
   0.319    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 215
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 203
Length adjustment: 21
Effective length of query: 181
Effective length of database: 182
Effective search space:    32942
Effective search space used:    32942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate AZOBR_RS14135 AZOBR_RS14135 (isopropylmalate isomerase)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.25612.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25612.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.