Alignments for a candidate for asd in Azospirillum brasilense Sp245

Align aspartate semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate AZOBR_RS14735 AZOBR_RS14735 aspartate-semialdehyde dehydrogenase

Query= metacyc::AT1G14810-MONOMER
         (375 letters)



>FitnessBrowser__azobra:AZOBR_RS14735
          Length = 337

 Score =  290 bits (741), Expect = 5e-83
 Identities = 157/345 (45%), Positives = 215/345 (62%), Gaps = 11/345 (3%)

Query: 34  LQESAPS---LAVVGVTGAVGQEFLSVLSDRDFPYSSIKMLASKRSAGKRVAFDGHEYTV 90
           +  S+PS   +A+VG TGAVG+E + VL  R FP + + + AS+RSAG+ V     E T+
Sbjct: 1   MSTSSPSPRRVAIVGATGAVGREMVDVLHRRSFPVAELGLFASERSAGRTVETPFGEKTL 60

Query: 91  EELTADSFNGVDIALFSAGGSISKEFGPLAAEKGTIVVDNSSAFRMVDGVPLVIPEVNPE 150
                +   G DI L +  G  +KE  P  A  G +V+DNSSAFR  D VPL++PE+N  
Sbjct: 61  VAFDVEKVKGYDIVLLAVSGDFAKEHAPAIAAGGALVIDNSSAFRYDDNVPLIVPEINAH 120

Query: 151 AMKGIKVGMGKGALIANPNCSTIICLMAVTPLHHHAKVKRMVVSTYQAASGAGAAAMEEL 210
           AM       G   LIANPNC+T I ++A+ PLH    +KR++VSTYQA SGAGA  M EL
Sbjct: 121 AM-------GDAKLIANPNCTTAIAVVALGPLHKAFGLKRVIVSTYQATSGAGAEGMAEL 173

Query: 211 VQQTREVLEGKPPTCNIFGQQYAFNLFSHNAPILDNGYNEEEMKLVKETRKIWNDTEVKV 270
            +QTR  L+GKP   ++F     FNL        +NGY +EEMK+  ETRKI    ++ V
Sbjct: 174 EEQTRNQLDGKPVVNSVFRHPIPFNLIPQIDAFQENGYTKEEMKVTWETRKILEIPDLPV 233

Query: 271 TATCIRVPVMRAHAESVNLQFENPLDENTAREILKKAPGVYIIDDRASNTFPTPLDVSNK 330
           + T +R+P  RAH+E++ ++  +P+  + AR +L  APGV + D  A   +P PL+ + +
Sbjct: 234 SCTAVRIPTYRAHSEAITVETLSPVTPDAARAVLADAPGVVVKDVPADGVYPMPLNATGQ 293

Query: 331 DDVAVGRIRRDVSQDGNFGLDIFVCGDQIRKGAALNAVQIAEMLL 375
            DV VGRIR  +   G+ GLD+FVCGDQ+ KGAALNAVQIAE+ L
Sbjct: 294 FDVEVGRIRTSLI-FGDHGLDLFVCGDQLLKGAALNAVQIAELSL 337


Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 336
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 337
Length adjustment: 29
Effective length of query: 346
Effective length of database: 308
Effective search space:   106568
Effective search space used:   106568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate AZOBR_RS14735 AZOBR_RS14735 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.25858.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25858.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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