Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate AZOBR_RS15015 AZOBR_RS15015 dihydroxy-acid dehydratase
Query= SwissProt::P55186
(617 letters)
>FitnessBrowser__azobra:AZOBR_RS15015
Length = 621
Score = 962 bits (2487), Expect = 0.0
Identities = 477/615 (77%), Positives = 531/615 (86%)
Query: 1 MPPYRSRTTTHGRNMAGARGLWRATGMKDEDFGKPIIAVANSFTQFVPGHVHLKDLGQLV 60
MP YRSRT+THGRNMAGARGLWRATGMKD DFGKPIIA+ANSFTQFVPGHVHLKDLGQLV
Sbjct: 1 MPHYRSRTSTHGRNMAGARGLWRATGMKDGDFGKPIIAIANSFTQFVPGHVHLKDLGQLV 60
Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIADSVEYMVNAHCADAIVCIS 120
AREIE AGGVAKEFNTIAVDDGIAMGH GMLYSLPSR+LIAD+VEYMVNAHCADA+VCIS
Sbjct: 61 AREIEKAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADAVEYMVNAHCADALVCIS 120
Query: 121 NCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKVTVKGKIRALDLVDAMVVAADDSYSDEE 180
NCDKITPGMLMAAMRLNIP VFVSGGPMEAGKV +GK +A+DL+DAMV AAD + SDEE
Sbjct: 121 NCDKITPGMLMAAMRLNIPAVFVSGGPMEAGKVNWRGKTKAVDLIDAMVAAADPTVSDEE 180
Query: 181 VEAIEKAACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADREALFKEAGRVVV 240
+E+ +CPTCGSCSGMFTANSMNCLTEALGLSLPGNG++LATHADR+ LF AGR+ V
Sbjct: 181 AAVMERGSCPTCGSCSGMFTANSMNCLTEALGLSLPGNGTILATHADRKELFLAAGRMAV 240
Query: 241 DLCQRWYEQEDATALPRGIATRAAFENAMSLDIAMGGSTNTVLHLLAAAHEGGIDFSMAD 300
+LC+RWY++EDATALPRGIAT AFENAM+LDIAMGGSTNTVLHLLAAA EG + F+MAD
Sbjct: 241 ELCRRWYQEEDATALPRGIATFEAFENAMTLDIAMGGSTNTVLHLLAAAQEGQVPFTMAD 300
Query: 301 IDRLSRHVPCLSKVAPAKSDVHMEDVHRAGGVMAILGELERGGLIDASQPTVHAPTMGEA 360
IDRLSR VP + KVAPA SDVH+EDVH+AGG+ ILGEL+RGGL++ TVHA T+G+A
Sbjct: 301 IDRLSRRVPNVCKVAPAVSDVHIEDVHKAGGIFGILGELDRGGLLNRDVATVHAKTLGDA 360
Query: 361 LARWDIGRTNSQIAHEFFKAAPGGKPTQVAFSQAARWEELDLDRENGVIRSVEHPFSKDG 420
L RWD+ RT + H FKAAPGG PT +AFSQ RW ELDLDR+ GVIRSV+ FSKDG
Sbjct: 361 LDRWDVKRTQDEGVHTMFKAAPGGIPTTIAFSQEKRWPELDLDRDKGVIRSVDSAFSKDG 420
Query: 421 GLAVLFGNLAPEGCIVKTAGVDESILTFRGTARVFESQDAAVSGILGGQVKAGEVVVIRY 480
GLAVLFGN+A +GCIVKTAGVD S L F G ARVFESQDAAV ILG VKAG+VVVIRY
Sbjct: 421 GLAVLFGNIAEKGCIVKTAGVDASNLVFAGPARVFESQDAAVEAILGDTVKAGDVVVIRY 480
Query: 481 EGPKGGPGMQEMLYPTTYLKSKGLGAACALVTDGRFSGGTSGLSIGHVSPEAGEGGLIAL 540
EGP+GGPGMQEMLYPT+YLKSKGLG ACALVTDGRFSGGTSGLSIGH SPEA +GG I L
Sbjct: 481 EGPRGGPGMQEMLYPTSYLKSKGLGKACALVTDGRFSGGTSGLSIGHASPEAAQGGAIGL 540
Query: 541 VETGDPILIDIPTRGITLEVSDAVLAARREAQLARGKDAWTPLNRKRDLTPALRAYAAMT 600
V+ GD I IDIP R I L +SD L RR+A+ A+G DAW P NR R ++PALRAYAA+T
Sbjct: 541 VQDGDRIEIDIPNRKINLALSDEELQRRRDAENAKGADAWKPANRNRVVSPALRAYAALT 600
Query: 601 TNAARGAVRDVSQIE 615
T+A RGAVRDVSQ+E
Sbjct: 601 TSADRGAVRDVSQVE 615
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1372
Number of extensions: 49
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 621
Length adjustment: 37
Effective length of query: 580
Effective length of database: 584
Effective search space: 338720
Effective search space used: 338720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate AZOBR_RS15015 AZOBR_RS15015 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.16811.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16811.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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