Alignments for a candidate for leuD in Azospirillum brasilense Sp245

Align 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate AZOBR_RS15560 AZOBR_RS15560 isopropylmalate isomerase

Query= SwissProt::Q1MA52
         (202 letters)



>FitnessBrowser__azobra:AZOBR_RS15560
          Length = 198

 Score =  177 bits (449), Expect = 1e-49
 Identities = 90/200 (45%), Positives = 123/200 (61%), Gaps = 7/200 (3%)

Query: 1   MDKFVKLTGVAAPLPVVNVDTDMIIPKDYLKTIKRTGLGTGLFAEARYNEDGSENPDFVL 60
           MD FV LT  A PL + N+DTD ++P  +LK  +  G G  LF + R        P F L
Sbjct: 1   MDPFVTLTAPAVPLDIANIDTDQLLPARFLKKPRSAGYGNFLFHDER-------KPGFPL 53

Query: 61  NKPAYRDAKILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIK 120
           + PAY  A++LV+  NFGCGSSRE A +AL+D G RCV++ SF DIF  N  KNG+L I 
Sbjct: 54  DDPAYAGARVLVSDRNFGCGSSREGAVYALVDGGFRCVVAPSFGDIFAANAAKNGLLTIT 113

Query: 121 VSQEDLDKLMDDASRGSNAILTVDLENLEITGPDGGLIKFDLDEFKRHCLLNGLDDIGLT 180
           + +E + +L         A +TVDL    ++GPDG  + F +D FK+ CL+ GLDD+ LT
Sbjct: 114 LPEETVAELRRQLQEAPGAAVTVDLPAQTLSGPDGQPLPFAIDPFKKECLIEGLDDVALT 173

Query: 181 LEKGKAIDSFEKKNAASHPW 200
           L    AID+F++ +AA+ PW
Sbjct: 174 LRHQDAIDAFDRADAAARPW 193


Lambda     K      H
   0.319    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 135
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 198
Length adjustment: 21
Effective length of query: 181
Effective length of database: 177
Effective search space:    32037
Effective search space used:    32037
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate AZOBR_RS15560 AZOBR_RS15560 (isopropylmalate isomerase)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.9185.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9185.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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