Alignments for a candidate for leuC in Azospirillum brasilense Sp245

Align 3-isopropylmalate dehydratase large subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 (characterized)
to candidate AZOBR_RS15565 AZOBR_RS15565 isopropylmalate isomerase

Query= SwissProt::P15717
         (466 letters)



>FitnessBrowser__azobra:AZOBR_RS15565
          Length = 468

 Score =  511 bits (1317), Expect = e-149
 Identities = 261/464 (56%), Positives = 330/464 (71%), Gaps = 5/464 (1%)

Query: 3   KTLYEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGLRAHHRPVRQPGKTFATMD 62
           ++L++K++DAH+V   P+   LL IDRH +HE  S  AF  +    RPVR+P  TFA  D
Sbjct: 6   RSLFDKVWDAHLVATRPDGQALLAIDRHFLHE-GSFHAFGMIDHAKRPVRRPELTFAVAD 64

Query: 63  HNVSTQTKDINASGEMARIQMQELIKNCNEFGVELYDLNHPYQGIVHVMGPEQGVTLPGM 122
           H V + ++    +       +  L  N    G+  + L+ P QGIVHV+ PEQG+TLPG+
Sbjct: 65  HYVPSHSRAKPIADPEIANMVTMLEANAERHGLRHFGLHDPAQGIVHVLAPEQGLTLPGL 124

Query: 123 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVTGNAAPGITAKD 182
           TIVCGDSHT+THGAFGALAFGIG +EV HVLATQTL Q R KTM+I + G     +TAKD
Sbjct: 125 TIVCGDSHTSTHGAFGALAFGIGATEVSHVLATQTLWQRRPKTMRIIIDGELGAHVTAKD 184

Query: 183 IVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMTLCNMAIEMGAKAGLVAPDETTFNY 242
           ++LA+IG  G+ G  GHV+E+ G AIRALSMEGR+T+CNM+IE GA+AG++APD+ TF++
Sbjct: 185 LILAVIGFIGADGAAGHVIEYAGSAIRALSMEGRLTVCNMSIEAGARAGMIAPDDITFSW 244

Query: 243 VKGRLHAPKGRDFDEAVEYWKTLKTDDGATFDTVVALRAEEIAPQVTWGTNPGQVISVTD 302
           ++GR +APKG  FD AV +W+TL +D  A FD  V+L A  IAP VTWGT+P   + VT 
Sbjct: 245 IEGRNYAPKGDLFDRAVAHWRTLPSDPEAAFDREVSLDAAAIAPLVTWGTSPETAVPVTG 304

Query: 303 IIPDPASFSDPVERASAEKALAYMGLQPGVPLTDVAIDKVFIGSCTNSRIEDLRAAAEVA 362
            +PDP + SDPV      K L YMGL PG  L +V ID+VFIGSCTN+R+EDLRAAA V 
Sbjct: 305 TVPDPGAESDPVRAGQMRKMLDYMGLTPGTRLEEVGIDRVFIGSCTNARLEDLRAAAAVL 364

Query: 363 KGRK-VAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPG 421
           +GR+ V PG   LVV GS PV+ QAEAEGLD++FI AG EW  PGCSMC+ +N D +  G
Sbjct: 365 RGRRAVVPG---LVVAGSVPVRRQAEAEGLDRVFIGAGLEWGEPGCSMCVGINGDLVPAG 421

Query: 422 ERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRSI 465
           ERCAST+NRNF GRQG   RTHL+SPAMAAAAAVTG   D+R +
Sbjct: 422 ERCASTTNRNFPGRQGPNARTHLMSPAMAAAAAVTGRLTDVRKL 465


Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 770
Number of extensions: 32
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 468
Length adjustment: 33
Effective length of query: 433
Effective length of database: 435
Effective search space:   188355
Effective search space used:   188355
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate AZOBR_RS15565 AZOBR_RS15565 (isopropylmalate isomerase)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.2707.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2707.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.