Alignments for a candidate for gnd in Azospirillum brasilense Sp245

Align phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) (characterized)
to candidate AZOBR_RS15725 AZOBR_RS15725 6-phosphogluconate dehydrogenase

Query= BRENDA::P80859
         (469 letters)



>FitnessBrowser__azobra:AZOBR_RS15725
          Length = 460

 Score =  450 bits (1157), Expect = e-131
 Identities = 228/463 (49%), Positives = 312/463 (67%), Gaps = 7/463 (1%)

Query: 6   IGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKNVVGTYSIEEFVQSLE 65
           I V+GL VMG+NLA N+   G  V+ Y+    +   F   A+  N V   S+EE + +L+
Sbjct: 1   IAVLGLGVMGRNLAANLADHGAVVAGYDLDEGRRGAFA--AQVANAVPCASVEELLGALK 58

Query: 66  TPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIHFIGT 125
            PR IL+MV AG   D    +LLP L   D+LIDGGN++++DT RR    A +G+ F+G 
Sbjct: 59  APRTILMMVPAGAPVDELTAALLPRLSPGDVLIDGGNSHFRDTNRRAALAAAAGVRFVGL 118

Query: 126 GVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKV-DGEPCTTYIGPDGAGHYVKMV 184
           GVSGGEEGA +GP++M GG  EA   V P+L AI+A+  DGE C   +GP+GAGH+VKM+
Sbjct: 119 GVSGGEEGARRGPALMAGGDAEALAPVAPLLAAIAARAPDGESCFARVGPEGAGHFVKMI 178

Query: 185 HNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKKDEE 244
           HNGIEY DMQLI+E+Y +L+++ G S + L ++FA+WN GEL SYL+EIT DI   KD E
Sbjct: 179 HNGIEYADMQLIAEAYHLLREIGGCSYERLADIFADWNSGELASYLMEITTDILRTKDGE 238

Query: 245 TGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASGLLS 304
           +G P+++VI D AGQKGTG W + +AL+LG+P P I E+V AR +SA+K+ERV+A+  L+
Sbjct: 239 SGAPILEVIRDAAGQKGTGHWAATTALELGMPAPTIAEAVHARCLSALKDERVRAAEALA 298

Query: 305 GPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRGG 364
            P       + E+L+ +V  AL   +I  YAQGFA + A S ++ WD+    +A I+RGG
Sbjct: 299 IPH----APSTEDLVASVGDALLSGRIAVYAQGFAVIAAGSRQFGWDVDLAAVARIWRGG 354

Query: 365 CIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPVPSFSS 424
           CIIRA  L +I  A +R PEL NL+LD     ++       R+V++ A    VPVP+ +S
Sbjct: 355 CIIRARLLDRILTALNRAPELPNLMLDPDIAGLMTRGDAGFRRVVAAATLAAVPVPAMAS 414

Query: 425 ALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEW 467
           AL+Y+D YR+  L AN+IQAQRDYFGAH YERTD+ G+ HTEW
Sbjct: 415 ALSYWDGYRSGRLWANMIQAQRDYFGAHGYERTDRPGMVHTEW 457


Lambda     K      H
   0.315    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 497
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 460
Length adjustment: 33
Effective length of query: 436
Effective length of database: 427
Effective search space:   186172
Effective search space used:   186172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)

Align candidate AZOBR_RS15725 AZOBR_RS15725 (6-phosphogluconate dehydrogenase)
to HMM TIGR00873 (gnd: 6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44))

Software error:

../bin/blast/fastacmd -i /tmp/list.20587.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20587.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.