Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate AZOBR_RS16425 AZOBR_RS16425 branched-chain amino acid aminotransferase
Query= BRENDA::O86428 (307 letters) >FitnessBrowser__azobra:AZOBR_RS16425 Length = 290 Score = 243 bits (619), Expect = 5e-69 Identities = 129/290 (44%), Positives = 178/290 (61%), Gaps = 7/290 (2%) Query: 5 DRDGVIWYDGELVQWRDATTHVLTHTLHYGMGVFEGVRAYDTPQGTAIFRLQAHTDRLFD 64 DRDGVIWYDG LV WRDA HVL+H LHY VFEG R Y+ GT +F+L H++RL Sbjct: 8 DRDGVIWYDGALVPWRDANLHVLSHGLHYASCVFEGERVYN---GT-VFKLTEHSERLAA 63 Query: 65 SAHIMNMQIPYSRDEINEATRAAVRENNLESAYIRPMVFYGSEGMGLRASGLKVHVIIAA 124 SA I+ ++PYS EI+ AT V+ AY+RP+ + GSE MG+ A ++HV IA Sbjct: 64 SARILGFELPYSVAEIDAATNETVKAMGFTDAYVRPVAWRGSEMMGVAAQASRIHVAIAV 123 Query: 125 WSWGAYMGEEALQQGIKVRTSSFTRHHVNISMTRAKSNGAYINSMLALQEAISGGADEAM 184 W W +Y EA GIK+ S + R +++ T +K+ G Y+ L+ EA + G +A+ Sbjct: 124 WQWPSYFSPEAKMAGIKLTWSRWRRPAPDMAPTASKAAGLYMICTLSKHEAEAEGYQDAL 183 Query: 185 MLDPEGYVAEGSGENIFIIKDGVIYTPEVTACLNGITRNTILTLAAEHGFKLVEKRITRD 244 MLD GY+AE +G N+F++ DG I+TP+ L+GITR T++ LA G +++E+ I D Sbjct: 184 MLDYRGYLAEATGANLFLVMDGKIHTPKPDCFLDGITRRTVIDLAKARGIEVIERHIQPD 243 Query: 245 EVYIADEAFFTGTAAEVTPIREVDGRKIGAGRRGPVTEKLQKAYFDLVSG 294 E+ E F TGTAAEVTP+ ++ + GR V E L K Y LV G Sbjct: 244 ELANTQEVFLTGTAAEVTPVGQIGDHRFTPGR---VCETLVKDYDALVRG 290 Lambda K H 0.319 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 267 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 307 Length of database: 290 Length adjustment: 27 Effective length of query: 280 Effective length of database: 263 Effective search space: 73640 Effective search space used: 73640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate AZOBR_RS16425 AZOBR_RS16425 (branched-chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.23342.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23342.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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