Alignments for a candidate for lysA in Azospirillum brasilense Sp245

Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate AZOBR_RS16945 AZOBR_RS16945 diaminopimelate decarboxylase

Query= reanno::Korea:Ga0059261_2051
         (419 letters)



>FitnessBrowser__azobra:AZOBR_RS16945
          Length = 421

 Score =  413 bits (1061), Expect = e-120
 Identities = 215/422 (50%), Positives = 283/422 (67%), Gaps = 5/422 (1%)

Query: 1   MDHFNRKNGVLHAENVSIPAIAAEVGTPVYVYSTATLERHASALKNALAGLPSVHLAFAI 60
           M  F  +NGV+HAE+V +  IAAEVGTP Y YSTA LE H SA   A AG     + +A+
Sbjct: 1   MSAFAYRNGVMHAESVPLSTIAAEVGTPFYCYSTAALEAHYSAYAGAFAG-QDADVCYAV 59

Query: 61  KANPNLAVLGVLARQGYGADVVSGGELKRALAAGMPAEDVVFSGVGKTRAELQLGLDEGI 120
           KAN NLAV+   AR G GADVVSGGE++RALA G+PA  ++FSGVGKTR E++  L+ GI
Sbjct: 60  KANSNLAVIRAFARLGAGADVVSGGEMRRALAGGIPAGKIIFSGVGKTREEMRAALEAGI 119

Query: 121 GQFNLELEEEGEVLADLAHAQGKTAPAVLRVNPDVDAGTHAKISTGKAENKFGVAIDRAL 180
            Q N+E   E E L+++A + G TAP   RVNPDVDA THAKI+TGK ENKFGV  D A 
Sbjct: 120 HQINVESIPEVEALSEVAVSLGVTAPIAFRVNPDVDAKTHAKIATGKKENKFGVDYDHAR 179

Query: 181 EIFDRLAKRPGLNLRGVAIHIGSQLTELAPLEAAYKRVGELVAQLRAAGHTITHVDLGGG 240
           E++ + AK PG+    +A+HIGSQLT+LAP  AAY+RV  L+  LR  GH IT +DLGGG
Sbjct: 180 EVYAQAAKLPGIKPVAIAVHIGSQLTDLAPFRAAYERVAALLHVLREDGHDITRLDLGGG 239

Query: 241 LGVPYHAGQTVSTAEEFGAMVARVTQGWNVTLMFEPGRFICGNAGVLVTEVIWVKPAAGN 300
           LG+ Y        A ++ AMV  +T      +  EPGR + GNAG+LV+ VI++K     
Sbjct: 240 LGIVYKHEAPPDIA-DYAAMVKSITGNLGCRISLEPGRSLVGNAGILVSRVIYLKQGLHR 298

Query: 301 PYVIVDAAMNDLARPALYDAYHEFEAVEPTGEKFVA---NIAGPVCETGDTFAMGREIDV 357
            +VI+DAAMNDL RP LY+AYH    V    +       ++ GPVCE+GDTFA+ R +  
Sbjct: 299 RFVIIDAAMNDLIRPTLYEAYHGIVPVTEPAKGAATEPYDVVGPVCESGDTFALQRALPA 358

Query: 358 VKSGDLAVFRTAGAYGATMASTYNSRALVPEVLVSGDRFAVVADRIQPETIMGAERVPEW 417
           +   +L    +AGAYGA M+STYN+R L+PEVLV+GD+F+V+  R+  E ++  +RVP+W
Sbjct: 359 MAPDELVAILSAGAYGAVMSSTYNTRPLIPEVLVNGDQFSVIRPRVSVEELLALDRVPDW 418

Query: 418 VR 419
           ++
Sbjct: 419 LK 420


Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 537
Number of extensions: 20
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 421
Length adjustment: 32
Effective length of query: 387
Effective length of database: 389
Effective search space:   150543
Effective search space used:   150543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS16945 AZOBR_RS16945 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.24462.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24462.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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