Align aconitate hydratase (EC 4.2.1.3) (characterized)
to candidate AZOBR_RS17090 AZOBR_RS17090 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Query= BRENDA::P36683
(865 letters)
>FitnessBrowser__azobra:AZOBR_RS17090
Length = 861
Score = 1256 bits (3251), Expect = 0.0
Identities = 628/862 (72%), Positives = 720/862 (83%), Gaps = 6/862 (0%)
Query: 1 MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEA 60
+LE YR+HVAERAA GI PL A Q LV+LL NPP GEE FL+DL+T+RVP GVD+A
Sbjct: 1 VLEAYRQHVAERAALGIPALPLSAKQTEELVDLLLNPPQGEEAFLVDLITHRVPAGVDDA 60
Query: 61 AYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS 120
A VKA FLA++AKG SPL++ KA ELLGTM GG+NI PLID L DA+ AA L
Sbjct: 61 AKVKAAFLASLAKGNETSPLISKVKATELLGTMLGGFNIKPLIDLLGDAECGEAAAAGLK 120
Query: 121 HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTD 180
TLLMFD F+DV+E A GN AK V+QSWADAEWF +RP + LT+T+FKV+GETNTD
Sbjct: 121 TTLLMFDYFHDVKELADKGNANAKAVIQSWADAEWFTSRPEVPASLTLTIFKVSGETNTD 180
Query: 181 DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVV 240
DLSPAPDAWSRPDIPLHALAMLKN R GI P+ GV GPIKQ+E L+ KG +AYVGDVV
Sbjct: 181 DLSPAPDAWSRPDIPLHALAMLKNPRPGIVPEDAGVRGPIKQLEDLKAKGNLVAYVGDVV 240
Query: 241 GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN 300
GTGSSRKSATNSVLW+ G+DIP+VPNKR GG+CLG KIAPIF+NTMEDAGALPIE+DVS
Sbjct: 241 GTGSSRKSATNSVLWWTGEDIPYVPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSQ 300
Query: 301 LNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREA 360
+ GD +++ PY+G+ + G ++A F +K+DV+ DEVRAGGRIPLIIGRGLT +AREA
Sbjct: 301 METGDTVELRPYEGKALKN--GAVIAEFTVKSDVIFDEVRAGGRIPLIIGRGLTARAREA 358
Query: 361 LGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGV---KGIRPGAYCEPKMTSVGSQDTT 417
LGL S +FR +S +GF+LAQKMVGRA G+ +G+RPG YCEPKMT+VGSQDTT
Sbjct: 359 LGLAPSTLFRLPSSPVDSGKGFTLAQKMVGRAVGLPEGQGVRPGTYCEPKMTTVGSQDTT 418
Query: 418 GPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDG 477
GPMTRDELKDLACLGFSADLVMQSFCHTAAYPK VDV TH LP FI RGGV+LRPGDG
Sbjct: 419 GPMTRDELKDLACLGFSADLVMQSFCHTAAYPKLVDVKTHRELPTFISTRGGVALRPGDG 478
Query: 478 VIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFK 537
VIHSWLNR+L+PDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFK
Sbjct: 479 VIHSWLNRLLMPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFK 538
Query: 538 GKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTD 597
G +QPG+TLRDLV+AIPLYAI+QGLLTVEKKGKKNIFSGRILEIEGLP+LKVEQAFEL+D
Sbjct: 539 GALQPGVTLRDLVNAIPLYAIRQGLLTVEKKGKKNIFSGRILEIEGLPELKVEQAFELSD 598
Query: 598 ASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 657
ASAERSAA CT++LNKEPIIEY+ SNI L+KWMIA GY D RTL RRI+ ME W+ANP L
Sbjct: 599 ASAERSAAACTVRLNKEPIIEYMRSNITLMKWMIANGYEDARTLGRRIKAMEDWIANPSL 658
Query: 658 LEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHF 717
LE DADAEYAAVIDIDLADIKEPI+ PNDPDD + LS V G+KIDEVFIGSCMTNIGHF
Sbjct: 659 LEPDADAEYAAVIDIDLADIKEPIVACPNDPDDVKLLSEVAGDKIDEVFIGSCMTNIGHF 718
Query: 718 RAAGKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQA 777
RAAGK+LD K +PTRLW+APPT+MDA LTEEGYY V GKSGAR+E+PGCSLCMGNQA
Sbjct: 719 RAAGKILDG-KTDIPTRLWIAPPTKMDAQILTEEGYYGVLGKSGARMEMPGCSLCMGNQA 777
Query: 778 RVADGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTA 837
++ G+T +STSTRNFPNRLG V+L SAEL+AVAAL+GKLPTP EY V+ V++ A
Sbjct: 778 QIRKGSTAISTSTRNFPNRLGIDTRVYLGSAELSAVAALLGKLPTPAEYLEQVSVVNQKA 837
Query: 838 VDTYRYLNFNQLSQYTEKADGV 859
D YRY+NF+Q+ ++ + AD V
Sbjct: 838 GDIYRYMNFDQIKEFQDVADTV 859
Lambda K H
0.317 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2064
Number of extensions: 73
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 865
Length of database: 861
Length adjustment: 42
Effective length of query: 823
Effective length of database: 819
Effective search space: 674037
Effective search space used: 674037
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Align candidate AZOBR_RS17090 AZOBR_RS17090 (bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase)
to HMM TIGR00117 (acnB: aconitate hydratase 2 (EC 4.2.1.3))
../bin/blast/fastacmd -i /tmp/list.6511.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6511.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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