Alignments for a candidate for arcB in Azospirillum brasilense Sp245

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate AZOBR_RS19030 AZOBR_RS19030 ornithine carbamoyltransferase

Query= BRENDA::Q98BB6
         (303 letters)



>FitnessBrowser__azobra:AZOBR_RS19030
          Length = 304

 Score =  357 bits (916), Expect = e-103
 Identities = 180/302 (59%), Positives = 216/302 (71%), Gaps = 2/302 (0%)

Query: 2   SVRHFTDLSTVSEGDLRFMLDDAVVRKARLKAGERTRPLEGKVLAMIFDKPSTRTRVSFD 61
           +VRHF D+  + +  LR +L  A   K  + A        G+ LAMIF+KPSTRTRVSF+
Sbjct: 3   AVRHFLDIDRLDKATLRQILAMAATIKKDIPAYRSL--FAGRTLAMIFEKPSTRTRVSFE 60

Query: 62  VGMRQLGGETIMLTGTEMQLGRSETIADTAKVLSRYVDAIMIRTTSHDRLLELTENATVP 121
           VGMRQLGG+ ++L   +MQLGR ETI DTA+VLSRYVDA+M+RT   +R+ EL E A+VP
Sbjct: 61  VGMRQLGGDVVVLKPDDMQLGRGETIGDTARVLSRYVDAVMVRTMGEERVHELAEFASVP 120

Query: 122 VINGLTDDTHPCQLMADIMTFEEHRGPVAGKTIAWTGDGNNVLHSLLEASARFRFNLNVA 181
           +INGLTD +HPCQ+MAD+MTFEEHRGP+ G+T+AW GD NNV  S +  + R    + + 
Sbjct: 121 IINGLTDQSHPCQIMADVMTFEEHRGPIEGRTVAWIGDVNNVAVSWVHVAVRLGVEIRLG 180

Query: 182 VPEGSEPAQKHIDWSKAHGGKLHFTRSPEEAVDQADCVVTDCWVSMGQEHRARGHNVFSP 241
            PE   PA + +DW K  GG++  T SPEEAV  ADCVVTD W SM          V  P
Sbjct: 181 CPEIYGPAPELLDWVKREGGRITVTTSPEEAVRGADCVVTDAWASMHNTDVDERAAVLGP 240

Query: 242 YQVNAKLMAHAKPDALFMHCLPAHRGEEVTDEVIDGPHSVVFDEAENRLHAQKAVLAWCL 301
           YQVN  LMA A PDALFMHCLPAHRGEEVTD VIDG HSVV+DEAENRLHAQKA+LAWCL
Sbjct: 241 YQVNEALMALAAPDALFMHCLPAHRGEEVTDGVIDGRHSVVWDEAENRLHAQKAILAWCL 300

Query: 302 GA 303
           GA
Sbjct: 301 GA 302


Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 361
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 304
Length adjustment: 27
Effective length of query: 276
Effective length of database: 277
Effective search space:    76452
Effective search space used:    76452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate AZOBR_RS19030 AZOBR_RS19030 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.20353.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20353.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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