Align ATP phosphoribosyltransferase (EC 2.4.2.17) (characterized)
to candidate AZOBR_RS19500 AZOBR_RS19500 ATP phosphoribosyltransferase catalytic subunit
Query= reanno::azobra:AZOBR_RS19500 (222 letters) >FitnessBrowser__azobra:AZOBR_RS19500 Length = 222 Score = 437 bits (1123), Expect = e-127 Identities = 222/222 (100%), Positives = 222/222 (100%) Query: 1 VSASQPLVLALPKGRILKELRPLLAHAGIEPEAAFDDADSRLLRFATNIPNLSIIRVRSF 60 VSASQPLVLALPKGRILKELRPLLAHAGIEPEAAFDDADSRLLRFATNIPNLSIIRVRSF Sbjct: 1 VSASQPLVLALPKGRILKELRPLLAHAGIEPEAAFDDADSRLLRFATNIPNLSIIRVRSF 60 Query: 61 DVATFVAFGAAHLGVAGNDVLMEFDYPEIYAPLDLGIGKCRLSVAEPVELGESDDPSRWS 120 DVATFVAFGAAHLGVAGNDVLMEFDYPEIYAPLDLGIGKCRLSVAEPVELGESDDPSRWS Sbjct: 61 DVATFVAFGAAHLGVAGNDVLMEFDYPEIYAPLDLGIGKCRLSVAEPVELGESDDPSRWS 120 Query: 121 HVRVATKYPEVTRKHFAARGVQAECVKLNGAMELAPTLGLCRRIVDLVSTGSTLKANGLV 180 HVRVATKYPEVTRKHFAARGVQAECVKLNGAMELAPTLGLCRRIVDLVSTGSTLKANGLV Sbjct: 121 HVRVATKYPEVTRKHFAARGVQAECVKLNGAMELAPTLGLCRRIVDLVSTGSTLKANGLV 180 Query: 181 EIEHIADVTSRLIVNRAAFKTRPEEISGWIDRFREAVNARQA 222 EIEHIADVTSRLIVNRAAFKTRPEEISGWIDRFREAVNARQA Sbjct: 181 EIEHIADVTSRLIVNRAAFKTRPEEISGWIDRFREAVNARQA 222 Lambda K H 0.321 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 308 Number of extensions: 5 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 222 Length of database: 222 Length adjustment: 22 Effective length of query: 200 Effective length of database: 200 Effective search space: 40000 Effective search space used: 40000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate AZOBR_RS19500 AZOBR_RS19500 (ATP phosphoribosyltransferase catalytic subunit)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))
../bin/blast/fastacmd -i /tmp/list.28166.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28166.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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