Alignments for a candidate for hisG in Azospirillum brasilense Sp245

Align ATP phosphoribosyltransferase (EC 2.4.2.17) (characterized)
to candidate AZOBR_RS19500 AZOBR_RS19500 ATP phosphoribosyltransferase catalytic subunit

Query= reanno::azobra:AZOBR_RS19500
         (222 letters)



>FitnessBrowser__azobra:AZOBR_RS19500
          Length = 222

 Score =  437 bits (1123), Expect = e-127
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   VSASQPLVLALPKGRILKELRPLLAHAGIEPEAAFDDADSRLLRFATNIPNLSIIRVRSF 60
           VSASQPLVLALPKGRILKELRPLLAHAGIEPEAAFDDADSRLLRFATNIPNLSIIRVRSF
Sbjct: 1   VSASQPLVLALPKGRILKELRPLLAHAGIEPEAAFDDADSRLLRFATNIPNLSIIRVRSF 60

Query: 61  DVATFVAFGAAHLGVAGNDVLMEFDYPEIYAPLDLGIGKCRLSVAEPVELGESDDPSRWS 120
           DVATFVAFGAAHLGVAGNDVLMEFDYPEIYAPLDLGIGKCRLSVAEPVELGESDDPSRWS
Sbjct: 61  DVATFVAFGAAHLGVAGNDVLMEFDYPEIYAPLDLGIGKCRLSVAEPVELGESDDPSRWS 120

Query: 121 HVRVATKYPEVTRKHFAARGVQAECVKLNGAMELAPTLGLCRRIVDLVSTGSTLKANGLV 180
           HVRVATKYPEVTRKHFAARGVQAECVKLNGAMELAPTLGLCRRIVDLVSTGSTLKANGLV
Sbjct: 121 HVRVATKYPEVTRKHFAARGVQAECVKLNGAMELAPTLGLCRRIVDLVSTGSTLKANGLV 180

Query: 181 EIEHIADVTSRLIVNRAAFKTRPEEISGWIDRFREAVNARQA 222
           EIEHIADVTSRLIVNRAAFKTRPEEISGWIDRFREAVNARQA
Sbjct: 181 EIEHIADVTSRLIVNRAAFKTRPEEISGWIDRFREAVNARQA 222


Lambda     K      H
   0.321    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 308
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 222
Length adjustment: 22
Effective length of query: 200
Effective length of database: 200
Effective search space:    40000
Effective search space used:    40000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate AZOBR_RS19500 AZOBR_RS19500 (ATP phosphoribosyltransferase catalytic subunit)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.937.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.937.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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