Alignments for a candidate for fadA in Azospirillum brasilense Sp245

Align Acetyl-CoA C-acyltransferase (EC 2.3.1.16) (characterized)
to candidate AZOBR_RS20220 AZOBR_RS20220 acetyl-CoA acetyltransferase

Query= reanno::SB2B:6935813
         (387 letters)



>FitnessBrowser__azobra:AZOBR_RS20220
          Length = 382

 Score =  342 bits (876), Expect = 1e-98
 Identities = 201/384 (52%), Positives = 254/384 (66%), Gaps = 11/384 (2%)

Query: 5   VIVDCIRTPMGRSKGGVFRNVRAETLSAELMKALLLRNPGVDPNTIEDVIWGCVQQTLEQ 64
           VI    R+P   +  G    VR + L A ++ AL+ R  GV+P  IEDV+ GC     EQ
Sbjct: 9   VIAGYARSPFAFANKGELAKVRPDDLLAHVVAALVERT-GVNPQDIEDVVVGCAFPEGEQ 67

Query: 65  GFNIARNASLLAGVPKTAGAVTVNRLCGSSMEALHQASRAIMTGMGDTFIIGGVEHMGHV 124
           G NIAR  S LA +P TAGA T+NR CGSSM+A+HQA+ AI  G G+ F+ GG+E M  V
Sbjct: 68  GMNIARTVSFLAKLPLTAGATTINRYCGSSMQAIHQAAGAIQMGAGEVFLCGGIESMSRV 127

Query: 125 PM-NHGVDFHPGLAANVAKASGMMGLTAEMLGKLHGISREMQDQFAVRSHQRAHAASIEG 183
           PM  +    HPGL  +  +A   MG+TAE + + + ISR  Q+  A  SH +A AA   G
Sbjct: 128 PMMGYNPLPHPGLKDHYPEAYCSMGVTAENVARRYEISRADQEAMAAESHAKAAAAQQAG 187

Query: 184 RFANEIYAIEGHDANGALIKVDYDEVIRPETTLESLAGLRPVFDPANGTVTAGTSSALSD 243
           R A EI AI+      A   V+ D  IRP T+ E+L+GL+P F  A+G+VTAGTSS L+D
Sbjct: 188 RLAEEIVAIQT-----AAGLVERDGCIRPGTSGETLSGLKPAF-LADGSVTAGTSSPLTD 241

Query: 244 GAAAMLVMEEEKARALGLTIRARVRSMAVAGCDAAIMGYGPVPATQKALARAGLSIQDMD 303
           GA+A+LV  E  A+A GL I AR+RS+AVAGC   +MG GPVPA QKALARAGLSI+D+D
Sbjct: 242 GASAVLVTTEAYAKANGLPILARIRSVAVAGCAPEVMGLGPVPAAQKALARAGLSIRDID 301

Query: 304 VIELNEAFAAQSLPCVKDLGLMDVVEDKVNLNGGAIALGHPLGCSGARISTTLINLMEHK 363
           VIELNEAFAAQ++ C++DL   D+   KVNL+GGAIALGHPLG +GARI+     L++ +
Sbjct: 302 VIELNEAFAAQAIACMRDL---DIDPAKVNLDGGAIALGHPLGATGARITGKAAALLKRE 358

Query: 364 DATLGLATMCIGLGQGIATVFERV 387
                LAT CIG GQGIATV E V
Sbjct: 359 GKQFALATQCIGGGQGIATVLEAV 382


Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 433
Number of extensions: 19
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 382
Length adjustment: 30
Effective length of query: 357
Effective length of database: 352
Effective search space:   125664
Effective search space used:   125664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS20220 AZOBR_RS20220 (acetyl-CoA acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.7578.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7578.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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