Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Asp/Glu-ADT subunit C; EC 6.3.5.- (uncharacterized)
to candidate AZOBR_RS20640 AZOBR_RS20640 glutamyl-tRNA amidotransferase subunit C
Query= curated2:B6IN24
(95 letters)
>FitnessBrowser__azobra:AZOBR_RS20640
Length = 95
Score = 130 bits (328), Expect = 3e-36
Identities = 67/95 (70%), Positives = 79/95 (83%)
Query: 1 MSLDKATVAKIAHLARIRVPEEEQEHLAQELNGILGWVEQLGEVDTDGVQPITSNVAQTL 60
MSLDKATVAKIAHLARI+VP++E +HLA EL+ IL +VEQLGEVDT V P+TS AQTL
Sbjct: 1 MSLDKATVAKIAHLARIKVPDDELDHLAGELSQILTFVEQLGEVDTQDVPPMTSVAAQTL 60
Query: 61 RRRQDVVTDGGYPEKVVANAPEGAEHFFAVPKVVE 95
RRR+D VTDGGY + V++N PE AE F+ VPKVVE
Sbjct: 61 RRRKDEVTDGGYRDAVLSNGPETAEGFYVVPKVVE 95
Lambda K H
0.314 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 95
Length of database: 95
Length adjustment: 10
Effective length of query: 85
Effective length of database: 85
Effective search space: 7225
Effective search space used: 7225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.6 bits)
S2: 39 (19.6 bits)
Align candidate AZOBR_RS20640 AZOBR_RS20640 (glutamyl-tRNA amidotransferase subunit C)
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.17845.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17845.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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