Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate AZOBR_RS20645 AZOBR_RS20645 glutamyl-tRNA(Gln) amidotransferase
Query= SwissProt::O06491
(485 letters)
>FitnessBrowser__azobra:AZOBR_RS20645
Length = 493
Score = 462 bits (1190), Expect = e-135
Identities = 244/468 (52%), Positives = 328/468 (70%), Gaps = 12/468 (2%)
Query: 17 KKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSEHGLLFGMPI 76
KKE +L + K ++ + + AF+ E+A A AK D A + E G + G+PI
Sbjct: 18 KKEFTAVELTEAHVKAVETIRP-LNAFITETPEQALAMAKASD-ARRAKGEAGPMEGLPI 75
Query: 77 GVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEFAMGSSTENS 136
VKD TKG+ TT +S IL+ F P Y++TV L AV +GK+N+DEFAMGS+ S
Sbjct: 76 AVKDLFCTKGVPTTAASHILDGFKPEYESTVTSNLWRDGAVMLGKVNLDEFAMGSANITS 135
Query: 137 AYKLTKNPWN--------LDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCGV 188
+ +PW+ VPGGSSGGSAAAVAA + G+DTGGSIRQPA+F G+
Sbjct: 136 HHGNVISPWSPGEVGNWSRQIVPGGSSGGSAAAVAARAALGATGTDTGGSIRQPAAFTGI 195
Query: 189 VGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPDF 248
VG+KPTYGR SR+G+VAFASSLDQ GP+TRTVED A +L+++ G D DSTS ++ VPDF
Sbjct: 196 VGIKPTYGRCSRWGVVAFASSLDQAGPMTRTVEDAAIMLRSMCGFDPKDSTSVDLPVPDF 255
Query: 249 LSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKYALAT 308
++LTGDI+GLK+ +PKEY EG+ E ++ L+ GA E+SLPH+KYALAT
Sbjct: 256 RAALTGDIRGLKVGIPKEYRVEGMPAEIAAIWDQGIEWLKQAGAEPVEISLPHTKYALAT 315
Query: 309 YYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTFALSS 368
YY+++ +EAS+NLAR+DG+RYG R + A +L D+Y+ TR GFG EV+RRI++GT+ LS+
Sbjct: 316 YYIVAPAEASSNLARYDGLRYGLRVEGA-SLKDMYENTRGAGFGKEVRRRILIGTYVLSA 374
Query: 369 GYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYANDILT 428
GYYDAYY KA++VRT IK DF++ F++ DVI+ PT P+ AF IGE DP+ MY ND+ T
Sbjct: 375 GYYDAYYNKARQVRTRIKWDFDEAFKQCDVILTPTAPSTAFAIGEKMDDPIQMYLNDVFT 434
Query: 429 IPVNLAGVPGISVPCGL-ADGLPLGLQIIGKHFDESTVYRVAHAFEQA 475
+P +LAG+PG+SVP G+ +DGLPLGLQ++G+ FDE TV RV E+A
Sbjct: 435 VPASLAGLPGMSVPAGVGSDGLPLGLQLLGRPFDEETVLRVGQVIEKA 482
Lambda K H
0.315 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 669
Number of extensions: 36
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 493
Length adjustment: 34
Effective length of query: 451
Effective length of database: 459
Effective search space: 207009
Effective search space used: 207009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Align candidate AZOBR_RS20645 AZOBR_RS20645 (glutamyl-tRNA(Gln) amidotransferase)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.22960.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22960.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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