Alignments for a candidate for hutI in Azospirillum brasilense Sp245

Align Imidazolonepropionase (EC 3.5.2.7) (characterized)
to candidate AZOBR_RS21725 AZOBR_RS21725 imidazolonepropionase

Query= reanno::Cup4G11:RR42_RS16905
         (420 letters)



>FitnessBrowser__azobra:AZOBR_RS21725
          Length = 404

 Score =  514 bits (1323), Expect = e-150
 Identities = 262/397 (65%), Positives = 298/397 (75%), Gaps = 2/397 (0%)

Query: 12  DGVWHRCHLLPDGDPAKAIRDAALVVQQGRIVWLGMQAELPQAYAALPRHDAGSAWITPG 71
           D +W   H      P   +RDA + V+ GRI W+G   + P   AA   HD G  W+TPG
Sbjct: 4   DSLWFNGHAATMA-PGGVVRDAVIAVKDGRIAWIGAAKDRPAGRAA-EEHDLGGRWVTPG 61

Query: 72  LVDCHTHLVYGGQRADEFAMRLAGAGYEEIARAGGGIVSTVRATRAADEDTLFALAAARL 131
           L+DCHTHLV+GG RA EF MRL GA YEEIARAGGGI STV ATRAADED L A AA RL
Sbjct: 62  LIDCHTHLVFGGNRAREFEMRLEGATYEEIARAGGGIASTVAATRAADEDGLIASAAVRL 121

Query: 132 APLLAEGVTTLEIKSGYGLDLASERKQLRVARRLGDAFGVTVHTTFLGAHALPPEYAGRA 191
             LLAEGVT +E+KSGYGLDLA+ER+ LR AR LG+ F VTV  T L AHALPPE+AGRA
Sbjct: 122 QRLLAEGVTMVEVKSGYGLDLATERRMLRAARALGERFPVTVRMTGLAAHALPPEFAGRA 181

Query: 192 DDYITLVCETMMPVLADEGLIDAVDAFCESVGFSLAQTERVFQAAERHGLRVKLHAEQLS 251
           DDYI LVCE ++P LA EGL+DAVDAFCE + FS  QT RVF  A+R GL VKLHA+QLS
Sbjct: 182 DDYIALVCEDILPALAAEGLLDAVDAFCERIAFSPEQTARVFDTAQRLGLPVKLHADQLS 241

Query: 252 NLGGTALAARYRALSADHLEHLDEAGVVAMAGSGTVAVLLPGAYYFLRDTNLPPIDLLRR 311
           + GG ALAARY+ALSADH+EH  E G  AMA +GTVAVLLPGA+Y LR+T LPPI+L RR
Sbjct: 242 DGGGAALAARYKALSADHVEHTGEEGARAMADAGTVAVLLPGAFYTLRETKLPPIELFRR 301

Query: 312 HGVPMAISTDHNPGTSPVTSLLLMMNMACTLFRLTVPEVLAGVTTHAARALGAADRHGLL 371
           HGVPMA+STD NPGTSP  SLLLM+NMACTLFRLT  E LAGVT +AA+ALG A  HG L
Sbjct: 302 HGVPMAVSTDCNPGTSPAVSLLLMLNMACTLFRLTPQEALAGVTRNAAQALGMAATHGTL 361

Query: 372 AAGRAADFVLWNVDSPAELAYWFGRNPAAAVVRQGKV 408
             G+AAD  +WNV  PAEL YW G NP AAVVR G++
Sbjct: 362 EPGKAADLAVWNVGDPAELCYWLGANPCAAVVRGGRL 398


Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 596
Number of extensions: 22
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 404
Length adjustment: 31
Effective length of query: 389
Effective length of database: 373
Effective search space:   145097
Effective search space used:   145097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS21725 AZOBR_RS21725 (imidazolonepropionase)
to HMM TIGR01224 (hutI: imidazolonepropionase (EC 3.5.2.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.24103.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24103.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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