Alignments for a candidate for mmsB in Azospirillum brasilense Sp245

Align 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (characterized)
to candidate AZOBR_RS22360 AZOBR_RS22360 3-hydroxyisobutyrate dehydrogenase

Query= reanno::psRCH2:GFF2390
         (296 letters)



>FitnessBrowser__azobra:AZOBR_RS22360
          Length = 296

 Score =  296 bits (757), Expect = 5e-85
 Identities = 159/291 (54%), Positives = 193/291 (66%), Gaps = 1/291 (0%)

Query: 3   IGFIGLGNMGAPMAHNLLKAGHQLSVFDLNAAAVENLVGAGALPVDSPTAIAQGNAELII 62
           I FIGLGNMGAPM  NLLKAGH +  FDL+ AA      AGA     P A A G AE+++
Sbjct: 4   IAFIGLGNMGAPMMRNLLKAGHTVLAFDLSEAACTAARDAGATIATGPGAAA-GEAEVVV 62

Query: 63  TMLPAAAHVKGVYLGVNGLIAHSRAGVMLIDCSTIDPHSAREVAKAAAEHGNPMLDAPVS 122
           TMLPA  HV+ VY   +G+IA ++ G + ID ST+D  SAR VA AA   G+ M+DAPVS
Sbjct: 63  TMLPAGKHVREVYTAPDGIIAKAKPGSLFIDSSTVDVDSARFVAAAAEAAGHAMVDAPVS 122

Query: 123 GGTGGAAAGTLTFMVGGSDPDFDHAQPILAAMGKNIVHCGAAGNGQVAKVANNMLLGISM 182
           GG GGA A TLTFMVGGSD  F  A+PIL+AMGK IVH G  GNGQ AK+ NNM+LGISM
Sbjct: 123 GGVGGAEAATLTFMVGGSDTAFRRAEPILSAMGKAIVHTGGPGNGQAAKICNNMILGISM 182

Query: 183 IGVAEAMALGVALGMDAKTLAGVINTSSGRCWSSDTYNPFPGVLDNVPSSRGYSGGFGSD 242
           +GV+EA AL   LG+ ++ L  V + SSG+CWS  +Y P PG +   P++R Y  GF + 
Sbjct: 183 LGVSEAFALAEKLGLGSQKLFDVASKSSGQCWSLTSYCPVPGPVPTSPANRDYQPGFAAA 242

Query: 243 LMLKDLGLATEAAKQVRQPVILGALAQQLYQSFSAQGHGGLDFSAIINQYR 293
           LMLKDL LA EA +    P+ LG  A Q+Y  F   G GG DFS I+N  R
Sbjct: 243 LMLKDLKLAVEAGQSTGSPLPLGGEAAQMYALFCNAGFGGKDFSGIVNLLR 293


Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 300
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 296
Length adjustment: 26
Effective length of query: 270
Effective length of database: 270
Effective search space:    72900
Effective search space used:    72900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate AZOBR_RS22360 AZOBR_RS22360 (3-hydroxyisobutyrate dehydrogenase)
to HMM TIGR01692 (mmsB: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.31680.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31680.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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