Align formimidoylglutamate deiminase (EC 3.5.3.13) (characterized)
to candidate AZOBR_RS23505 AZOBR_RS23505 N-formimino-L-glutamate deiminase
Query= BRENDA::Q9HU77 (453 letters) >FitnessBrowser__azobra:AZOBR_RS23505 Length = 462 Score = 528 bits (1360), Expect = e-154 Identities = 270/452 (59%), Positives = 321/452 (71%), Gaps = 9/452 (1%) Query: 1 MSAIFAERALLPEGWARNVRFEISADGVLAEIRPDANADGAERLGGAVLPGMPNLHSHAF 60 M+ +F ERALLPEGWA NV A G L + DA++DG R G V+PGMPNLHSHAF Sbjct: 1 MNGLFCERALLPEGWASNVALRFDARGTLTAVERDASSDGLPRAAGPVIPGMPNLHSHAF 60 Query: 61 QRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFH 120 QRAMAGL E AG DSFWTWR+ MY V R++PE E +A LY+EM K GYTAVAEFH Sbjct: 61 QRAMAGLTEYAGASEDSFWTWRDAMYGFVRRMTPEAAEAVAALLYMEMAKQGYTAVAEFH 120 Query: 121 YVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGS 180 Y+HH DGR YAD AE+S RI AA AGIGLT LPVLY+H+GFGG+P S+GQ+RFIN Sbjct: 121 YLHHSADGRPYADRAEMSRRILAAADTAGIGLTHLPVLYAHSGFGGKPPSDGQKRFINDV 180 Query: 181 EAYLELLQRLRAPL--EAAGHSLGLCFHSLRAVTPQQIATVLAAGHDDL----PVHIHIA 234 + L ++ + + E AG GL HSLRAVTP+++ L G D L P+HIHIA Sbjct: 181 DGLLSIVSAMEKAMGAERAGRRAGLALHSLRAVTPEEMRDAL-TGLDALDPGAPIHIHIA 239 Query: 235 EQQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLST 294 EQ EVDDC AWS +RP++WL EN V RWCLVHATH PAEV MA SGAVAGLCL+T Sbjct: 240 EQTAEVDDCVAWSSKRPVEWLLENAPVGPRWCLVHATHVTPAEVDGMAASGAVAGLCLTT 299 Query: 295 EANLGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRLYRDDQP 354 EANLGDG+FPA FLAQGGR G+GSDSH+S+S EELR LEYGQRL R+RN L D P Sbjct: 300 EANLGDGLFPAIPFLAQGGRFGVGSDSHISVSAAEELRLLEYGQRLVQRRRNVLRIGDCP 359 Query: 355 MIGRTLYDAALAGGAQALGQPI--GSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFA 412 IG LY AA+AGGAQALGQP+ G + VG+ ADL+VLD ++P L S D+LL+ ++FA Sbjct: 360 SIGGGLYRAAVAGGAQALGQPVTGGGVQVGQPADLVVLDADNPKLLSRTDDSLLDAYVFA 419 Query: 413 GGDRQVRDVMVAGRWVVRDGRHAGEERSARAF 444 VRDV+ AGR VVR+GRH E+ A+ Sbjct: 420 SDGHAVRDVIAAGRTVVREGRHVREDAIRAAY 451 Lambda K H 0.321 0.136 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 665 Number of extensions: 29 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 453 Length of database: 462 Length adjustment: 33 Effective length of query: 420 Effective length of database: 429 Effective search space: 180180 Effective search space used: 180180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (24.3 bits)
Align candidate AZOBR_RS23505 AZOBR_RS23505 (N-formimino-L-glutamate deiminase)
to HMM TIGR02022 (hutF: formiminoglutamate deiminase (EC 3.5.3.13))
../bin/blast/fastacmd -i /tmp/list.15460.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15460.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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