Align N-formylglutamate amidohydrolase (EC 3.5.1.68) (characterized)
to candidate AZOBR_RS23510 AZOBR_RS23510 N-formylglutamate amidohydrolase
Query= metacyc::MONOMER-11615 (267 letters) >FitnessBrowser__azobra:AZOBR_RS23510 Length = 266 Score = 293 bits (750), Expect = 3e-84 Identities = 140/263 (53%), Positives = 184/263 (69%), Gaps = 2/263 (0%) Query: 4 VLSFHQGRLPLLISMPHAGLRLSDAVRDGLVEEARSLPDTDWHIPQLYDFARDLGASVVA 63 V F R P+L+S+PH G L D LV EA+ LPDTDWH+P+LYDF DLG V+ Sbjct: 3 VFGFRAARRPVLVSLPHVGTALPDGFIGRLVPEAQGLPDTDWHLPRLYDFLEDLGVGVIQ 62 Query: 64 AEYSRFVIDLNRPDDDKPLYAGATTGLYPATLFEGEPLFKEGLAPSGEERKRYLEQIWRP 123 A +SR+V+DLNRP +D PLY+GATTGL P TLF+G PL++ G P E + + W P Sbjct: 63 ARFSRYVVDLNRPSNDTPLYSGATTGLCPTTLFDGAPLYQPGAEPDPGEVAERVTRYWTP 122 Query: 124 YHGTLRRELDRLREQFGYALLWDAHSIRSHIPHLFDGKLPDFNLGTFNGASCDPVLAERL 183 YH + E+ RLR++FG A+L+DAHSIRS +P LF+G+LPD N+GT +G S DPVL++RL Sbjct: 123 YHDAITAEMTRLRDRFGRAVLFDAHSIRSVVPRLFEGRLPDLNIGTNDGRSADPVLSDRL 182 Query: 184 QGVCAE--ATGYSHVLNGRFKGGHITRHYGDPAKHIHAVQLELAQSTYMEETEPFTYRED 241 V A+ A G++HVLNGRFKGGHITRH+G P++ HAVQLE+AQ TYMEE PF + E Sbjct: 183 VAVGADAGADGFTHVLNGRFKGGHITRHFGRPSEGWHAVQLEMAQVTYMEEDAPFAFDEA 242 Query: 242 LAQPTQVVLKQLLQALLAWGAER 264 A+ + L++ + A+ W ER Sbjct: 243 RAERIRPHLRRFIGAMADWAEER 265 Lambda K H 0.321 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 306 Number of extensions: 20 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 267 Length of database: 266 Length adjustment: 25 Effective length of query: 242 Effective length of database: 241 Effective search space: 58322 Effective search space used: 58322 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate AZOBR_RS23510 AZOBR_RS23510 (N-formylglutamate amidohydrolase)
to HMM TIGR02017 (hutG: N-formylglutamate deformylase (EC 3.5.1.68))
../bin/blast/fastacmd -i /tmp/list.10773.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10773.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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