Alignments for a candidate for metE in Azospirillum brasilense Sp245

Align 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase (EC 2.1.1.14) (characterized)
to candidate AZOBR_RS24275 AZOBR_RS24275 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

Query= BRENDA::P25665
         (753 letters)



>FitnessBrowser__azobra:AZOBR_RS24275
          Length = 772

 Score =  852 bits (2200), Expect = 0.0
 Identities = 446/769 (57%), Positives = 551/769 (71%), Gaps = 28/769 (3%)

Query: 6   HTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLPVGDFA 65
           HTLGFPR+G +RELK A E+YW G S+R+EL+ VG +LR RHW  + Q  +DL+PVGDFA
Sbjct: 5   HTLGFPRIGAKRELKFALEAYWKGASSRDELVRVGADLRKRHW--RDQGALDLVPVGDFA 62

Query: 66  WYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGR-----APTGEP-------AAAA 113
           +YD VL  S  LGN+P R +   G   +D  FR+ RGR     A + E         AA 
Sbjct: 63  FYDQVLDMSFTLGNLPERVKGFHGDA-LDNYFRVARGRSAETAAHSAEEHGGCCGGVAAG 121

Query: 114 EMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLDEVDEALALGHKVKPVLLGPVTWLWLGKV 173
           EMTKWF+TNYHY+VPEF  G  F L  ++LL+++ EA A G K KPV++GPVT+L LGK 
Sbjct: 122 EMTKWFDTNYHYIVPEFDAGTTFTLDASRLLEQLAEAKAQGVKAKPVIVGPVTYLALGKA 181

Query: 174 KGEQFDRLSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQAWLDAYKPAYDAL- 232
           K +  D+L+LL  +LPVY  +L  L  +G+EWVQIDEP LV EL  AW DA+  AY AL 
Sbjct: 182 K-DGSDKLALLPRLLPVYAGLLQALTDQGVEWVQIDEPILVTELEAAWRDAFTQAYRALG 240

Query: 233 QGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDDVAELHKRLPSDWLLSAGLIN 292
            G VKLLL TYF  +  NL    +LPVQGLH+D +  +D+V  L + LP+D ++S G++N
Sbjct: 241 TGAVKLLLATYFGQLQDNLPLACSLPVQGLHLDAITARDEVDALIQALPTDRVVSLGVVN 300

Query: 293 GRNVWRADLTEKYAQIKDI---VGKRDLWVASSCSLLHSPIDLSVETRLDAEVKSWFAFA 349
           GRN+W+ DL      ++ +   +G+R LW+A SCSLLH P+DL+ E +LD E +SW AFA
Sbjct: 301 GRNIWKTDLGATLDWLEPVAERLGER-LWIAPSCSLLHVPVDLAGERKLDEEARSWLAFA 359

Query: 350 LQKCHELALLRDAL----NSGDTAALAEWSA---PIQARRHSTRVHNPAVEKRLAAITAQ 402
           +QK  E+ +L  AL    + G  A  AE  A    ++ARRHS RV+NPAV+  +AAI A+
Sbjct: 360 VQKLEEIRVLAIALTPGRDGGRAAVAAELDANRAAVEARRHSPRVNNPAVKAAVAAIDAR 419

Query: 403 DSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIA 462
             +R + +  RA  Q  R  LP +PTTTIGSFPQT EIR  R  FK G +DA  Y   + 
Sbjct: 420 LGRRKSAFIERAAKQATRLNLPKFPTTTIGSFPQTKEIRQARSQFKAGTIDAVAYTEAMR 479

Query: 463 EHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPPIV 522
             I +++ EQE LGLDVLVHGEAERNDMVEYFGE LDG+VF+Q GWVQSYGSRCVKPPI+
Sbjct: 480 GEIARSVREQEALGLDVLVHGEAERNDMVEYFGEQLDGYVFSQGGWVQSYGSRCVKPPIL 539

Query: 523 IGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALR 582
            GDISRP  +TV+W  YA SLTDKP+KGMLTGPVTIL WSF R+D  R    +Q+ALA+R
Sbjct: 540 FGDISRPRAMTVDWIAYAASLTDKPMKGMLTGPVTILNWSFVRDDQPRSESCRQLALAIR 599

Query: 583 DEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHM 642
           +EV DLE AG+G+IQIDE ALREGLPLR+S W AYL W VE+FRI A    D+TQIHTHM
Sbjct: 600 EEVLDLETAGVGVIQIDEAALREGLPLRKSQWQAYLDWAVESFRITANGVADETQIHTHM 659

Query: 643 CYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDYPNEIGPGVYDIHSPNVPSVE 702
           CY EFNDI+ SIAA+DADVITIETSRSDMELL++F++F YPNEIGPGVYDIHSPN+P+  
Sbjct: 660 CYSEFNDIIASIAAMDADVITIETSRSDMELLDAFDDFKYPNEIGPGVYDIHSPNIPTEG 719

Query: 703 WIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAALANMVQAAQNLR 751
            I  L+KKAA+RIPA+RLWVNPDCGLKTR W E   AL NMV AA+ LR
Sbjct: 720 HIVDLMKKAAERIPADRLWVNPDCGLKTRQWAEVLPALTNMVSAAKTLR 768


Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1703
Number of extensions: 74
Number of successful extensions: 9
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 772
Length adjustment: 40
Effective length of query: 713
Effective length of database: 732
Effective search space:   521916
Effective search space used:   521916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Align candidate AZOBR_RS24275 AZOBR_RS24275 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase)
to HMM TIGR01371 (metE: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC 2.1.1.14))

Software error:

../bin/blast/fastacmd -i /tmp/list.22699.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22699.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.