Alignments for a candidate for glpK in Azospirillum brasilense Sp245

Align Glycerol kinase (EC 2.7.1.30) (characterized)
to candidate AZOBR_RS25905 AZOBR_RS25905 glycerol kinase

Query= reanno::Smeli:SM_b21009
         (497 letters)



>FitnessBrowser__azobra:AZOBR_RS25905
          Length = 501

 Score =  625 bits (1613), Expect = 0.0
 Identities = 301/492 (61%), Positives = 371/492 (75%), Gaps = 2/492 (0%)

Query: 3   GYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEA 62
           G++LAIDQGTTSTRAIVFD     AGV ++EF QH+P  GWVEHDPE+IW+  V+ ++ A
Sbjct: 5   GHVLAIDQGTTSTRAIVFDRRGVPAGVARREFAQHYPADGWVEHDPEDIWRDTVAVMRGA 64

Query: 63  IEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKT 122
           ++++G++A DIAAIGITNQRET VVWDR TG+P+H AIVWQDRRT+  C KL ++G    
Sbjct: 65  VDEAGLSAADIAAIGITNQRETTVVWDRRTGEPVHRAIVWQDRRTSDLCRKLVEEGCGPL 124

Query: 123 FVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDA 182
             +KTGLL+D YFS TK+ W+L +V GA+ RA +GELCFGTID+FL+ RLTGG    TDA
Sbjct: 125 VRRKTGLLIDSYFSATKIAWILDHVPGARERAERGELCFGTIDSFLLHRLTGGRVHATDA 184

Query: 183 TNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSLFGAAIPILGVAG 242
           TNASR+++++I    WDDEL  + R+P+ M+PEV D +A+FG T+P L G AIPI G+AG
Sbjct: 185 TNASRSMVFDIHRQDWDDELLALFRIPRAMMPEVLDSSAEFGATEPDLLGRAIPITGIAG 244

Query: 243 DQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEG 302
           DQQAAT GQACF+PGM+KSTYGTGCFALLNTG + V S++ +LTT+AYRLDG TTYALEG
Sbjct: 245 DQQAATFGQACFQPGMVKSTYGTGCFALLNTGDEPVESRSNMLTTVAYRLDGRTTYALEG 304

Query: 303 SIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAI 362
           SIF+AGAA++WLRDGL +I  A  T  +A     S  VYLVPAF GLGAPHWDP AR AI
Sbjct: 305 SIFIAGAAIKWLRDGLGIITHASQTDDMATRVPDSHGVYLVPAFVGLGAPHWDPQARAAI 364

Query: 363 FGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDW--RRNGNDTVLRVDGGMVASDWTMQ 420
           FG+T + GPA  ARAALEAV +QTRDL +AM  DW          LRVDGGM A+DW  Q
Sbjct: 365 FGLTLDAGPAHIARAALEAVAFQTRDLRDAMVSDWSAAHTATSDALRVDGGMAANDWLCQ 424

Query: 421 RLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFAKSWARDRRFEPHMDEATRK 480
            L+D+LD PV+RP ++ETTALG A LAG + GV+ +Q A A +W  DRRFEP MD A R 
Sbjct: 425 FLADVLDLPVERPAVIETTALGAAGLAGLKVGVYRDQAALAGAWRCDRRFEPRMDAAKRV 484

Query: 481 VKLKGWRSAVKR 492
               GW  AV+R
Sbjct: 485 RLYDGWLDAVRR 496


Lambda     K      H
   0.319    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 838
Number of extensions: 26
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 501
Length adjustment: 34
Effective length of query: 463
Effective length of database: 467
Effective search space:   216221
Effective search space used:   216221
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate AZOBR_RS25905 AZOBR_RS25905 (glycerol kinase)
to HMM TIGR01311 (glpK: glycerol kinase (EC 2.7.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.20014.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20014.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.