Alignments for a candidate for mmsB in Azospirillum brasilense Sp245

Align Probable 3-hydroxyisobutyrate dehydrogenase; HIBADH; EC 1.1.1.31 (uncharacterized)
to candidate AZOBR_RS26815 AZOBR_RS26815 3-hydroxyisobutyrate dehydrogenase

Query= curated2:P63936
         (294 letters)



>FitnessBrowser__azobra:AZOBR_RS26815
          Length = 299

 Score =  286 bits (733), Expect = 3e-82
 Identities = 152/295 (51%), Positives = 188/295 (63%), Gaps = 4/295 (1%)

Query: 1   MTTIAFLGLGNMGAPMSANLVGAGHVVRGFDPAPTAASGAAAHGVAVFRSAPEAVAEADV 60
           M  IAF+GLGNMG PM  NL  AGH V G+D  P A    AA G  V  +  EA+A+AD 
Sbjct: 1   MARIAFIGLGNMGRPMCDNLTKAGHDVVGYDVVPAARDAYAAAGGRVASTLAEALADADT 60

Query: 61  VITMLPTGEVVRRCYTD---VLAAARPATLFIDSSTISVTDAREVHALAESHGMLQLDAP 117
           VI+M+PTG+ VR  Y D   VLA ARP T+ ID STI V  AR V   A   G + +DAP
Sbjct: 61  VISMIPTGKHVRAAYEDEGGVLAHARPGTMLIDCSTIDVESARAVSKAAADAGFVMVDAP 120

Query: 118 VSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAV 177
           VSG V  A A TL FMVGG      RARPVL  M  KI H GA+G G A K+CNNM+  +
Sbjct: 121 VSGAVPAAQAGTLTFMVGGTAEGFERARPVLTAMGPKIFHVGASGNGVALKICNNMMAGM 180

Query: 178 QQIAIAEAFVLAEKLGLSAQSLFDVITGATGNCWAVHTNCPVPGPVPTSPANNDFKPGFS 237
             +AI+E F LAEKLGL  Q+++DV+T ++GNCWA+ + CPVPGPVP SPAN D++PGF+
Sbjct: 181 SMVAISEVFALAEKLGLDHQTVYDVMTVSSGNCWALQSYCPVPGPVPASPANRDYQPGFA 240

Query: 238 TALMNKDLGLAMDAVAATGATAPLGSHAADIYAKFAA-DHADLDFSAVIHTLRAR 291
            A+M KD+ L+ +A A +GA  PL   AA +Y       H + DFSAV   +  R
Sbjct: 241 AAMMLKDMRLSQNAAATSGAATPLAGSAAALYQMLVEHGHGNKDFSAVFALITGR 295


Lambda     K      H
   0.319    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 288
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 299
Length adjustment: 26
Effective length of query: 268
Effective length of database: 273
Effective search space:    73164
Effective search space used:    73164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate AZOBR_RS26815 AZOBR_RS26815 (3-hydroxyisobutyrate dehydrogenase)
to HMM TIGR01692 (mmsB: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.22305.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22305.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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