Alignments for a candidate for leuD in Azospirillum brasilense Sp245

Align 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate AZOBR_RS27810 AZOBR_RS27810 isopropylmalate isomerase

Query= SwissProt::Q1MA52
         (202 letters)



>FitnessBrowser__azobra:AZOBR_RS27810
          Length = 208

 Score =  212 bits (540), Expect = 3e-60
 Identities = 102/195 (52%), Positives = 137/195 (70%)

Query: 6   KLTGVAAPLPVVNVDTDMIIPKDYLKTIKRTGLGTGLFAEARYNEDGSENPDFVLNKPAY 65
           ++TG+AAPLP  NVDTD IIPK +L TI R+GLG GLF+E R+++DG E PDFVLN+  +
Sbjct: 7   RITGIAAPLPRANVDTDAIIPKAHLLTIHRSGLGAGLFSEWRFDDDGRERPDFVLNQAPW 66

Query: 66  RDAKILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIKVSQED 125
           R+AKIL+AG+NFGCGSSREHA W+L+DFGIRCVI+ SFA IF+ NC KNG+  + + +  
Sbjct: 67  REAKILLAGENFGCGSSREHAVWSLMDFGIRCVIAPSFASIFHENCQKNGLAAVTLDEAA 126

Query: 126 LDKLMDDASRGSNAILTVDLENLEITGPDGGLIKFDLDEFKRHCLLNGLDDIGLTLEKGK 185
           L  L+  A     A  TVD++   +T PDG    F ++  +R  LL GLD+IG +L    
Sbjct: 127 LAHLVACAQATPAATTTVDIKASRVTAPDGREFPFTMEAARRQALLEGLDEIGASLRHDA 186

Query: 186 AIDSFEKKNAASHPW 200
           A+ +FE ++ A  PW
Sbjct: 187 AMAAFEARDRAQRPW 201


Lambda     K      H
   0.319    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 157
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 208
Length adjustment: 21
Effective length of query: 181
Effective length of database: 187
Effective search space:    33847
Effective search space used:    33847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate AZOBR_RS27810 AZOBR_RS27810 (isopropylmalate isomerase)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.28049.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28049.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.