Alignments for a candidate for leuC in Azospirillum brasilense Sp245

Align 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate AZOBR_RS27815 AZOBR_RS27815 isopropylmalate isomerase

Query= SwissProt::Q7TXH6
         (473 letters)



>FitnessBrowser__azobra:AZOBR_RS27815
          Length = 471

 Score =  530 bits (1365), Expect = e-155
 Identities = 262/459 (57%), Positives = 327/459 (71%), Gaps = 1/459 (0%)

Query: 8   PRTLAEKIWDDHIVVSGGGCAPDLIYIDLHLVHEVTSPQAFDGLRLAGRRVRRPELTLAT 67
           PR++ +KIWD H+V   G     L++ID H++HEVTSPQA+ GL  AGRR+RRP+LT AT
Sbjct: 4   PRSIIDKIWDQHVVADLGD-GRVLLHIDRHMLHEVTSPQAYAGLAAAGRRLRRPDLTFAT 62

Query: 68  EDHNVPTVDIDQPIADPVSRTQVETLRRNCAEFGIRLHSMGDIEQGIVHVVGPQLGLTQP 127
            DH V T +       P     +  LR N    G+ L  +GD+ QGIVHV+ P+LG+  P
Sbjct: 63  ADHIVSTENGRTDDTVPGGPEMIRALRANAEATGVALFDLGDVRQGIVHVIAPELGIALP 122

Query: 128 GMTIVCGDSHTSTHGAFGALAMGIGTSEVEHVLATQTLPLRPFKTMAVNVDGRLPDGVSA 187
           G T+VCGDSHTST GA GA+A GIGTSEVEHV+ATQT  LR   TM + V G  P GVSA
Sbjct: 123 GATLVCGDSHTSTVGALGAMAWGIGTSEVEHVMATQTAILRRPPTMRITVSGTRPAGVSA 182

Query: 188 KDIILALIAKIGTGGGQGHVIEYRGSAIESLSMEGRMTICNMSIEAGARAGMVAPDETTY 247
           KD++L LIA IGT G  G+ +EY G AI +LSME RMT+CNMS+E GAR G++APDE T+
Sbjct: 183 KDMVLKLIATIGTAGATGYGVEYAGPAIRALSMEERMTVCNMSVELGARFGLIAPDEVTF 242

Query: 248 AFLRGRPHAPTGAQWDTALVYWQRLRTDVGAVFDTEVYLDAASLSPFVTWGTNPGQGVPL 307
           A+L+GRP AP GA W+ A+V W+ L +D GA FD E+ LD +SL+P V+WGT+P   + +
Sbjct: 243 AYLQGRPFAPAGALWEQAVVAWRALASDPGARFDAEIELDVSSLTPQVSWGTSPQDCIGV 302

Query: 308 AAAVPDPQLMTDDAERQAAEKALAYMDLRPGTAMREIAVDAVFVGSCTNGRIEDLRVVAE 367
              VPDP+   D   RQA  +AL Y+ L PGT +R++ VD VF+GSCTN RIEDLR  A 
Sbjct: 303 GETVPDPEREADPKRRQAMRRALDYIGLEPGTPIRDLPVDMVFIGSCTNSRIEDLRAAAA 362

Query: 368 VLRGRKVADGVRMLIVPGSMRVRAQAEAEGLGEIFTDAGAQWRQAGCSMCLGMNPDQLAS 427
           VL+GR+VA G+R L+VPGS +VR QAEAEGL  +FT AG +WR+ GCSMC GMN D++  
Sbjct: 363 VLKGRRVAAGLRALVVPGSGQVRRQAEAEGLDRVFTAAGFEWREPGCSMCAGMNADRVPP 422

Query: 428 GERCAATSNRNFEGRQGAGGRTHLVSPAVAAATAVRGTL 466
           G+RC ATSNRNFEGRQG G RTHL SPA AAA AV G +
Sbjct: 423 GKRCVATSNRNFEGRQGPGARTHLASPATAAAAAVAGRI 461


Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 779
Number of extensions: 41
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 471
Length adjustment: 33
Effective length of query: 440
Effective length of database: 438
Effective search space:   192720
Effective search space used:   192720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate AZOBR_RS27815 AZOBR_RS27815 (isopropylmalate isomerase)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.21592.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21592.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.