Alignments for a candidate for fadA in Azospirillum brasilense Sp245

Align 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (characterized)
to candidate AZOBR_RS28180 AZOBR_RS28180 acetyl-CoA acetyltransferase

Query= reanno::acidovorax_3H11:Ac3H11_2994
         (397 letters)



>FitnessBrowser__azobra:AZOBR_RS28180
          Length = 397

 Score =  501 bits (1291), Expect = e-146
 Identities = 248/389 (63%), Positives = 305/389 (78%)

Query: 7   DPIVIVGAARTPMGSLQGDFSSLAAHDLGGAAIKAAIERAGVSPDAVGEVLFGNCLMAGQ 66
           DP+VIV AARTP+G  QG+ S+L AH LG  A++AA+ RAG++P+ V EVL G  L AGQ
Sbjct: 6   DPVVIVSAARTPLGRFQGELSALPAHALGAHAVRAALSRAGLAPERVDEVLLGCVLPAGQ 65

Query: 67  GQAPARQAAFKGGLPKGAGAVTLSKMCGSGMKAAMMAHDMLLAGSHDVMVAGGMESMTNA 126
           GQAPARQAA   GLP   GA T++K+CGSGMKA M+AHD++ AGS D++VAGGMESM+NA
Sbjct: 66  GQAPARQAARGAGLPDATGATTVNKVCGSGMKATMLAHDLIRAGSADLVVAGGMESMSNA 125

Query: 127 PYLLQKGRGGYRLGHDRIFDHMMLDGLEDAYEAGRSMGTFGEDCAAKYSFTREQQDAFAT 186
           PYLL K RGGYR+GHDRI DH+MLDGLEDAYE GR MG FGE  A  Y FTR +QDA+A 
Sbjct: 126 PYLLAKARGGYRIGHDRILDHLMLDGLEDAYEGGRPMGDFGEATADLYGFTRAEQDAYAV 185

Query: 187 ASVQRAKAATESGAFAAEIVPVTVKTRAGETVVSVDEGPGKVKLEKIATLKPAFKKDGTI 246
            ++ RA+AA  SGAF AEI PVT+  + GE  V+ DE P KV  EKI  LKPAF++DGTI
Sbjct: 186 ETLTRARAAIASGAFTAEIAPVTLAVKGGERTVADDENPLKVAPEKIPALKPAFRRDGTI 245

Query: 247 TAASSSSINDGAAALVMMRESTAKKLGAKPLARIVSHATHAQEPEWFATAPLGATQKALA 306
           TAASSS+  DGAAAL++ R S A++ G   LA I+ HATH+Q+P WF TAP+ A +K L 
Sbjct: 246 TAASSSANADGAAALLLTRRSLAEREGLPVLATILGHATHSQDPAWFTTAPIPAIRKLLD 305

Query: 307 KAGWQVGDVQLWEINEAFAVVPMALMKELDLPHDKVNVNGGACALGHPIGASGARIMVTL 366
           + GW +GDV L+EINEAFAVV MA  ++L +P D +NVNGGACALGHPIGA+GAR++VTL
Sbjct: 306 RVGWGIGDVDLFEINEAFAVVAMAAQRDLGIPRDALNVNGGACALGHPIGATGARLIVTL 365

Query: 367 IHALKARGLTKGLATLCIGGGEATAVALE 395
           +HAL ARGL +G+A+LCIGGGEATA+A+E
Sbjct: 366 LHALAARGLRRGVASLCIGGGEATAIAVE 394


Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 530
Number of extensions: 16
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 397
Length adjustment: 31
Effective length of query: 366
Effective length of database: 366
Effective search space:   133956
Effective search space used:   133956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS28180 AZOBR_RS28180 (acetyl-CoA acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.26063.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26063.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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