Alignments for a candidate for argE in Azospirillum brasilense Sp245

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate AZOBR_RS30425 AZOBR_RS30425 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__azobra:AZOBR_RS30425
          Length = 385

 Score =  292 bits (747), Expect = 1e-83
 Identities = 159/376 (42%), Positives = 228/376 (60%), Gaps = 10/376 (2%)

Query: 5   EILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGY 64
           +IL +LV F +V    N D++ W +  LE+ G    ++P  +G ++N+FA++GP +  G 
Sbjct: 9   DILERLVAFPTVSRDSNLDLILWAKERLEAAGATTRLVPSEDGRKANLFASVGPADRPGV 68

Query: 65  IISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRP 124
           ++SGH DVVP     WTSDPFRL   A  LYGRGT DMKGF+AA +A   + +   L +P
Sbjct: 69  LLSGHTDVVPVDGQAWTSDPFRLTRRAGNLYGRGTADMKGFVAAAMALAQRASGRTLSQP 128

Query: 125 LHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGR 184
           LHLALSYDEE GC GV  +I  +  L  +P   I+GEPT M+ + AHKGK A R+  RG 
Sbjct: 129 LHLALSYDEEVGCLGVRRLIDMMAALPVRPRFCIVGEPTLMQVVTAHKGKTALRIDCRGV 188

Query: 185 SGHSSRPDQGLNAIHGVAGVLTQAVAEADRL-VGGPFEHVFEPPYSSLQIGTVKGGQAVN 243
             HSS   QG+NAIH    +LT      +R+   G  +  ++ P++++  G ++GG A+N
Sbjct: 189 ECHSSLAPQGMNAIHMACDMLTGLRRLQERVQTEGSRDADYDVPWTTIHAGVIQGGSALN 248

Query: 244 IIPDSCEVEFEARAISGVDPAE-LLAPVRKTAEALTTL------GFEVEWQELSAYPALS 296
           I+P+ C ++ E R +   DP E LL  VR  A A+ T          VE  ELS+YP+L 
Sbjct: 249 IVPNHCRLDMEIRHLP-QDPVEPLLDAVRAEAAAIETRARSAFPAAAVEIAELSSYPSLD 307

Query: 297 LEPDAPLAALLEELTGREALPAVSYGTEAGLF-QRAGIDAIICGPGDIGRAHKPDEYILI 355
            + D+ + + ++ LTG  +L  +S+GTE GLF QR  +  ++CGPG IG AHKPDE+I  
Sbjct: 308 TDGDSEVVSFVKALTGGNSLGKISFGTEGGLFQQRLSLPTVVCGPGSIGEAHKPDEFIAE 367

Query: 356 DELMACRAMVEALGAR 371
           ++L AC  M++ L  R
Sbjct: 368 EQLAACDRMLDLLLTR 383


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 367
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 385
Length adjustment: 30
Effective length of query: 344
Effective length of database: 355
Effective search space:   122120
Effective search space used:   122120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS30425 AZOBR_RS30425 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.27111.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27111.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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