Alignments for a candidate for cysE in Azospirillum brasilense Sp245

Align serine O-acetyltransferase (EC 2.3.1.30) (characterized)
to candidate AZOBR_RS30805 AZOBR_RS30805 serine acetyltransferase

Query= BRENDA::P0A9D4
         (273 letters)



>FitnessBrowser__azobra:AZOBR_RS30805
          Length = 273

 Score =  276 bits (705), Expect = 4e-79
 Identities = 139/255 (54%), Positives = 175/255 (68%)

Query: 4   EELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPAIAI 63
           E ++ +W  ++AEA  +   EP L  F    +L H +  SAL  +LA KL    + A  +
Sbjct: 10  EGVDGMWAMLRAEAENVVVKEPWLRPFIDTAILLHHDFPSALGSLLARKLGDSYISADQL 69

Query: 64  REVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQ 123
             +V  A A  P ++  A  D+QA+ TRDPA D   TP LY KGFHAL+ +RIGHWLW +
Sbjct: 70  AMLVRSAVADAPCIVEEACSDLQAICTRDPAADNCLTPFLYYKGFHALEWHRIGHWLWRR 129

Query: 124 GRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLG 183
            RR LA FLQ++VS  F VDIHPA  +GRG+ +DH TG+V+GETAV+ NDVSILQ VTLG
Sbjct: 130 ERRDLAHFLQSRVSEVFAVDIHPAVPVGRGVFIDHGTGVVIGETAVVGNDVSILQEVTLG 189

Query: 184 GTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARI 243
           GTGK  GDRHPK+R+GV++ AGAKILGNIE+G  AK+GAGSVVL+ VPP  T  GVPARI
Sbjct: 190 GTGKEHGDRHPKVRDGVLLSAGAKILGNIEIGSRAKVGAGSVVLKDVPPCATVVGVPARI 249

Query: 244 VGKPDSDKPSMDMDQ 258
           VG      P++ MDQ
Sbjct: 250 VGWCRDTVPALAMDQ 264


Lambda     K      H
   0.319    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 280
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 273
Length adjustment: 25
Effective length of query: 248
Effective length of database: 248
Effective search space:    61504
Effective search space used:    61504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate AZOBR_RS30805 AZOBR_RS30805 (serine acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.4543.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4543.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.