Alignments for a candidate for fbp in Azospirillum brasilense Sp245

Align fructose-bisphosphate aldolase (EC 4.1.2.13) (characterized)
to candidate AZOBR_RS30885 AZOBR_RS30885 fructose-bisphosphate aldolase

Query= BRENDA::A0KGD4
         (359 letters)



>FitnessBrowser__azobra:AZOBR_RS30885
          Length = 359

 Score =  396 bits (1018), Expect = e-115
 Identities = 204/350 (58%), Positives = 259/350 (74%), Gaps = 7/350 (2%)

Query: 9   VKPGVITGDDVQKVFAIAKENGFALPAVNCVGTDSVNAVLEAAAKVKAPVIVQFSNGGAV 68
           +KPGV+TG+D + + A  ++ G+ALPAVN VGT+ +NAVLEAAAK ++ VIVQ SNGGA 
Sbjct: 7   LKPGVVTGEDYRALIAACQDGGYALPAVNVVGTNGINAVLEAAAKNRSDVIVQLSNGGAR 66

Query: 69  FTAGKGLKLEGQQAAIIGAISGAKHVHAVAEAYGVPVILHTDHAAKKLLPWIDGLLDAGE 128
           F AG+G+K +  QA I+GA+S A+HVH +AE YGV V+LHTDHA K L+PW++G++D GE
Sbjct: 67  FYAGEGMK-DALQARILGAVSAAQHVHLLAEQYGVCVVLHTDHANKGLIPWVEGMIDHGE 125

Query: 129 KHFAETGKPLFSSHMLDLSEESLEENIDICCEYLTRMAKMNMTLELELGCTGGEEDGVDN 188
           +HF  TG+PLFSSHMLDLSEESL+ N+  C   L R+A + M+LE+ELG TGGEEDG+ +
Sbjct: 126 EHFRRTGRPLFSSHMLDLSEESLDFNLSECARVLKRLAPLGMSLEIELGVTGGEEDGIGS 185

Query: 189 SHMD---QSALYTQPEDVAYAYERLSKISPRFTIAASFGNVHGVYKPGNVKLTPSILDAS 245
             +D    + LYTQPEDV  AYE LS I   F++AASFGNVHGVY PGNVKL P IL AS
Sbjct: 186 EDLDAANNAHLYTQPEDVLRAYEELSPIG-HFSVAASFGNVHGVYAPGNVKLRPEILGAS 244

Query: 246 QKYVSEKFGIPAKSLDFVFHGGSGSTLEEIRESISYGVVKMNIDTDTQWATWEGILGFYK 305
           Q  V+E+ G  AK L  VFHGGSGS  E+I +++ +GV KMNIDTDTQ+A  E I GF  
Sbjct: 245 QALVAERHGGGAKPLALVFHGGSGSEKEKIAQAVGFGVFKMNIDTDTQFAFAESIGGFVL 304

Query: 306 KNEAYLQGQLGNPEGADKPNKKFYDPRVWLRAGQTTMIARLEKAFSDLNA 355
           +NEA  + Q+    G  KP KK YDPR WLR G+  M+ RL++AF+DL A
Sbjct: 305 ENEAAFRHQIDPQSG--KPLKKLYDPRKWLRLGEQGMVRRLDEAFADLGA 352


Lambda     K      H
   0.316    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 372
Number of extensions: 9
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 359
Length adjustment: 29
Effective length of query: 330
Effective length of database: 330
Effective search space:   108900
Effective search space used:   108900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate AZOBR_RS30885 AZOBR_RS30885 (fructose-bisphosphate aldolase)
to HMM TIGR01520 (fbaA: fructose-bisphosphate aldolase, class II (EC 4.1.2.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.7196.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7196.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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