Alignments for a candidate for fba in Azospirillum brasilense Sp245

Align fructose-bisphosphate aldolase (EC 4.1.2.13) (characterized)
to candidate AZOBR_RS30885 AZOBR_RS30885 fructose-bisphosphate aldolase

Query= BRENDA::P0AB71
         (359 letters)



>FitnessBrowser__azobra:AZOBR_RS30885
          Length = 359

 Score =  370 bits (951), Expect = e-107
 Identities = 192/351 (54%), Positives = 249/351 (70%), Gaps = 8/351 (2%)

Query: 8   VKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGAS 67
           +KPGV+TG+D + +    ++  +ALPAVN VGT+ INAVLE AAK ++ VIVQ SNGGA 
Sbjct: 7   LKPGVVTGEDYRALIAACQDGGYALPAVNVVGTNGINAVLEAAAKNRSDVIVQLSNGGAR 66

Query: 68  FIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAG 127
           F AG+G+K  +   A ILGA+S A HVH +AE YGV V+LHTDH  K L+PW++G++D G
Sbjct: 67  FYAGEGMKDALQ--ARILGAVSAAQHVHLLAEQYGVCVVLHTDHANKGLIPWVEGMIDHG 124

Query: 128 EKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVD 187
           E+HF  TG+PLFSSHM+DLSEESL  N+  C++ L+R++ +GM+LEIELG TGGEEDG+ 
Sbjct: 125 EEHFRRTGRPLFSSHMLDLSEESLDFNLSECARVLKRLAPLGMSLEIELGVTGGEEDGIG 184

Query: 188 NSHMDA---SALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKPGNVVLTPTILRD 244
           +  +DA   + LYTQPEDV  AY ELS I   F++AASFGNVHGVY PGNV L P IL  
Sbjct: 185 SEDLDAANNAHLYTQPEDVLRAYEELSPIG-HFSVAASFGNVHGVYAPGNVKLRPEILGA 243

Query: 245 SQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYY 304
           SQ  V+++H      L  VFHGGSGS  ++I  +V +GV KMNIDTDTQ+A  E +  + 
Sbjct: 244 SQALVAERHGGGAKPLALVFHGGSGSEKEKIAQAVGFGVFKMNIDTDTQFAFAESIGGFV 303

Query: 305 KANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNA 355
             NEA  + Q+    G  +P KK YDPR WLR G+  M+ RL++AF +L A
Sbjct: 304 LENEAAFRHQIDPQSG--KPLKKLYDPRKWLRLGEQGMVRRLDEAFADLGA 352


Lambda     K      H
   0.316    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 395
Number of extensions: 17
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 359
Length adjustment: 29
Effective length of query: 330
Effective length of database: 330
Effective search space:   108900
Effective search space used:   108900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate AZOBR_RS30885 AZOBR_RS30885 (fructose-bisphosphate aldolase)
to HMM TIGR01520 (fbaA: fructose-bisphosphate aldolase, class II (EC 4.1.2.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.13954.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13954.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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